Mercurial > gemma
annotate pkg/imports/stsh.go @ 4687:f73868037365
morphology: do correct clipping of classbreak heights based on z range of model.
author | Sascha L. Teichmann <sascha.teichmann@intevation.de> |
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date | Wed, 16 Oct 2019 13:02:08 +0200 |
parents | e020e6e34ad7 |
children | 046a07a33b19 |
rev | line source |
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1 // This is Free Software under GNU Affero General Public License v >= 3.0 |
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2 // without warranty, see README.md and license for details. |
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3 // |
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4 // SPDX-License-Identifier: AGPL-3.0-or-later |
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5 // License-Filename: LICENSES/AGPL-3.0.txt |
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6 // |
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7 // Copyright (C) 2019 by via donau |
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8 // – Österreichische Wasserstraßen-Gesellschaft mbH |
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9 // Software engineering by Intevation GmbH |
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10 // |
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11 // Author(s): |
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12 // * Sascha L. Teichmann <sascha.teichmann@intevation.de> |
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13 |
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14 package imports |
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15 |
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16 import ( |
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17 "archive/zip" |
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18 "context" |
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19 "database/sql" |
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20 "errors" |
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21 "fmt" |
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22 "os" |
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23 "path" |
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24 "path/filepath" |
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25 "strings" |
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26 "time" |
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27 |
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28 shp "github.com/jonas-p/go-shp" |
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29 |
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30 "gemma.intevation.de/gemma/pkg/common" |
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31 "gemma.intevation.de/gemma/pkg/models" |
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32 ) |
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33 |
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34 type StretchShape struct { |
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35 Dir string `json:"dir"` |
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36 } |
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37 |
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38 const STSHJobKind JobKind = "stsh" |
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39 |
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40 type stshJobCreator struct{} |
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41 |
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42 func init() { RegisterJobCreator(STSHJobKind, stshJobCreator{}) } |
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43 |
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44 func (stshJobCreator) Description() string { return "stretch from shape" } |
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45 |
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46 func (stshJobCreator) AutoAccept() bool { return false } |
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47 |
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48 func (stshJobCreator) Create() Job { return new(StretchShape) } |
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49 |
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50 func (stshJobCreator) Depends() [2][]string { |
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51 return [2][]string{ |
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52 {"stretches", "stretch_countries"}, |
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53 {}, |
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54 } |
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55 } |
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56 |
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57 const ( |
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58 stshInsertSQL = ` |
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59 INSERT INTO users.stretches ( |
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60 name, |
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61 stretch, |
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62 area, |
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63 objnam, |
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64 nobjnam, |
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65 date_info, |
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66 source_organization |
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67 ) VALUES ( |
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68 $1, |
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69 isrsrange(isrs_fromText($2), isrs_fromText($3)), |
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70 ST_GeomFromWKB($4, 4326), |
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71 $5, |
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72 $6, |
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73 $7, |
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74 $8) |
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75 RETURNING id` |
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76 ) |
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77 |
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78 // StageDone is merely the same as for the normal stretch import. |
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79 func (stshJobCreator) StageDone( |
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80 ctx context.Context, |
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81 tx *sql.Tx, |
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82 id int64, |
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83 ) error { |
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84 return stJobCreator{}.StageDone(ctx, tx, id) |
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85 } |
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86 |
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87 func (stsh *StretchShape) CleanUp() error { |
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88 return os.RemoveAll(stsh.Dir) |
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89 } |
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90 |
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91 func fixAttribute(s string) string { |
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92 return strings.TrimRight(s, "\x00") |
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93 } |
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94 |
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95 type stretchSummary struct { |
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96 ID int64 `json:"id"` |
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97 Name string `json:"name"` |
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98 From string `json:"from"` |
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99 To string `json:"to"` |
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100 ObjNam string `json:"objnam"` |
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101 NObjNam *string `json:"nobjnam"` |
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102 Date models.Date `json:"date-info"` |
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103 Countries models.UniqueCountries `json:"countries"` |
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104 } |
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105 |
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106 func parseUniqueCountries(s string) (models.UniqueCountries, error) { |
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107 unique := map[models.Country]struct{}{} |
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108 var countries models.UniqueCountries |
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109 for _, c := range strings.Split(s, ",") { |
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110 if c = strings.ToUpper(strings.TrimSpace(c)); c == "" { |
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111 continue |
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112 } |
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113 n := models.Country(c) |
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114 if !n.Valid() { |
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115 return nil, fmt.Errorf("'%s' is not a valid country code", c) |
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116 } |
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117 if _, found := unique[n]; found { |
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118 return nil, fmt.Errorf("'%s' is not a unique country code", c) |
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119 } |
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120 countries = append(countries, n) |
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121 unique[n] = struct{}{} |
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122 } |
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123 return countries, nil |
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124 } |
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125 |
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126 func (stsh *StretchShape) Do( |
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127 ctx context.Context, |
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128 importID int64, |
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129 conn *sql.Conn, |
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130 feedback Feedback, |
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131 ) (interface{}, error) { |
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132 |
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133 start := time.Now() |
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134 defer func() { |
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135 feedback.Info("Storing stretches from shape file took %v.", |
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136 time.Since(start)) |
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137 }() |
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138 |
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139 zpath := filepath.Join(stsh.Dir, "stretch.zip") |
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140 |
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141 z, err := zip.OpenReader(zpath) |
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142 if err != nil { |
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143 return nil, err |
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144 } |
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145 defer z.Close() |
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146 |
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147 shpF := common.FindInZIP(z, ".shp") |
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148 if shpF == nil { |
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149 return nil, errors.New("no SHP file found in ZIP") |
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150 } |
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151 prefix := strings.TrimSuffix(shpF.Name, path.Ext(shpF.Name)) |
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152 dbfF := common.FindInZIP(z, prefix+".dbf") |
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153 if dbfF == nil { |
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154 return nil, fmt.Errorf("no DBF file found for %s", shpF.Name) |
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155 } |
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156 |
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157 shpR, err := shpF.Open() |
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158 if err != nil { |
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159 return nil, err |
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160 } |
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161 |
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162 dbfR, err := dbfF.Open() |
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163 if err != nil { |
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164 shpR.Close() |
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165 return nil, err |
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166 } |
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167 sr := shp.SequentialReaderFromExt(shpR, dbfR) |
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168 defer sr.Close() |
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169 |
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170 fields := sr.Fields() |
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171 |
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172 // Map the attribute column indices. |
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173 |
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174 var ( |
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175 nameIdx = -1 |
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176 objnamIdx = -1 |
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177 nobjnamIdx = -1 |
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178 lowerIdx = -1 |
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179 upperIdx = -1 |
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180 sourceIdx = -1 |
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181 dateInfoIdx = -1 |
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182 countriesIdx = -1 |
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183 ) |
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184 |
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185 type index struct { |
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186 name string |
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187 idx *int |
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188 } |
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189 |
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190 indices := []index{ |
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191 {"name", &nameIdx}, |
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192 {"objnam", &objnamIdx}, |
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193 {"nobjnam", &nobjnamIdx}, |
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194 {"lower", &lowerIdx}, |
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195 {"upper", &upperIdx}, |
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196 {"source", &sourceIdx}, |
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197 {"source", &sourceIdx}, |
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198 {"dateinfo", &dateInfoIdx}, |
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199 {"countries", &countriesIdx}, |
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200 } |
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201 |
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202 nextField: |
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203 for i := range fields { |
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204 name := strings.ToLower(fields[i].String()) |
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205 for j := range indices { |
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206 if name == indices[j].name { |
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207 *indices[j].idx = i |
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208 continue nextField |
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209 } |
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210 } |
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211 } |
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212 |
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213 var missingFields []string |
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214 |
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215 for i := range indices { |
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216 if *indices[i].idx == -1 { |
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217 missingFields = append(missingFields, indices[i].name) |
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218 } |
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219 } |
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220 |
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221 if len(missingFields) > 0 { |
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222 return nil, fmt.Errorf("missing fields in attributes: %s", |
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223 strings.Join(missingFields, ", ")) |
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224 } |
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225 |
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226 // Now we have ensured that all columns are in place |
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227 // so start extracting data from the shape file. |
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228 |
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229 tx, err := conn.BeginTx(ctx, nil) |
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230 if err != nil { |
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231 return nil, err |
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232 } |
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233 defer tx.Rollback() |
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234 |
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235 insStmt, err := tx.PrepareContext(ctx, stshInsertSQL) |
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236 if err != nil { |
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237 return nil, err |
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238 } |
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239 defer insStmt.Close() |
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240 |
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241 insCountryStmt, err := tx.PrepareContext(ctx, stInsertCountrySQL) |
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242 if err != nil { |
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243 return nil, err |
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244 } |
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245 defer insCountryStmt.Close() |
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246 |
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247 trackStmt, err := tx.PrepareContext(ctx, trackImportSQL) |
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248 if err != nil { |
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249 return nil, err |
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250 } |
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251 defer trackStmt.Close() |
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252 |
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253 var stretches []*stretchSummary |
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254 |
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255 for sr.Next() { |
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256 |
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257 _, p := sr.Shape() |
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258 if p == nil { |
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259 feedback.Warn("Invalid NULL geometry found.") |
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260 continue |
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261 } |
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262 poly, err := shapeToPolygon(p) |
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263 if err != nil { |
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264 feedback.Warn("Invalid geometry found: %v.", err) |
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265 continue |
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266 } |
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267 |
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268 var ( |
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269 name = fixAttribute(sr.Attribute(nameIdx)) |
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270 objnam = fixAttribute(sr.Attribute(objnamIdx)) |
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271 nobjnam = fixAttribute(sr.Attribute(nobjnamIdx)) |
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272 lower = fixAttribute(sr.Attribute(lowerIdx)) |
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273 upper = fixAttribute(sr.Attribute(upperIdx)) |
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274 dateInfo = fixAttribute(sr.Attribute(dateInfoIdx)) |
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275 source = fixAttribute(sr.Attribute(sourceIdx)) |
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276 cnts = fixAttribute(sr.Attribute(countriesIdx)) |
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277 ) |
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278 |
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279 feedback.Info("Importing stretch %s (%s - %s).", |
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280 name, lower, upper) |
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281 |
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282 date, err := common.ParseTime(dateInfo) |
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283 if err != nil { |
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284 feedback.Warn("Invalid time value: %v.", err) |
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285 continue |
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286 } |
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287 |
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288 countries, err := parseUniqueCountries(cnts) |
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289 if err != nil { |
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290 feedback.Warn("Countries: %v.", err) |
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291 continue |
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292 } |
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293 |
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294 var nobjnamNull sql.NullString |
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295 if nobjnam != "" { |
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296 nobjnamNull = sql.NullString{ |
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297 String: nobjnam, |
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298 Valid: true, |
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299 } |
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300 } |
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301 |
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302 // Convert to a multi polygon. |
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303 area := poly.MultiPolygonGeom().AsWKB() |
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304 |
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305 var id int64 |
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306 |
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307 if err := insStmt.QueryRowContext( |
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308 ctx, |
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309 name, |
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310 lower, upper, |
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311 area, |
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312 objnam, |
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313 nobjnamNull, |
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314 date, |
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315 source, |
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316 ).Scan(&id); err != nil { |
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317 return nil, err |
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318 } |
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319 |
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320 // Store the countries |
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321 for _, country := range countries { |
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322 if _, err := insCountryStmt.ExecContext(ctx, id, country); err != nil { |
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323 return nil, err |
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324 } |
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325 } |
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326 |
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327 // Finally track the stretch |
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328 |
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329 if _, err := trackStmt.ExecContext( |
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330 ctx, |
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331 importID, |
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332 "users.stretches", |
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333 id, |
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334 ); err != nil { |
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335 return nil, err |
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336 } |
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337 |
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338 stretch := &stretchSummary{ |
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339 ID: id, |
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340 Name: name, |
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341 From: lower, |
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342 To: upper, |
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343 ObjNam: objnam, |
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Made 'go vet' happy again.
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344 Date: models.Date{Time: date}, |
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345 Countries: countries, |
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346 } |
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347 |
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348 if nobjnamNull.Valid { |
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349 stretch.NObjNam = &nobjnamNull.String |
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350 } |
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351 |
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352 stretches = append(stretches, stretch) |
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353 } |
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354 |
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355 if err := sr.Err(); err != nil { |
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356 return nil, err |
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357 } |
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358 |
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359 if len(stretches) == 0 { |
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360 return nil, UnchangedError("No stretches written.") |
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361 } |
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362 |
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363 if err := tx.Commit(); err != nil { |
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364 return nil, err |
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365 } |
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366 |
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367 return stretches, nil |
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368 } |