Mercurial > gemma
changeset 5710:37c8feeecb4d
Merged branch sr-v2 into default.
| author | Sascha L. Teichmann <sascha.teichmann@intevation.de> |
|---|---|
| date | Tue, 20 Feb 2024 21:28:56 +0100 |
| parents | b1a10654bf0f (current diff) a23fabfd54bb (diff) |
| children | 2dd155cc95ec 98300739f761 |
| files | |
| diffstat | 27 files changed, 1455 insertions(+), 849 deletions(-) [+] |
line wrap: on
line diff
--- a/Makefile Wed Feb 14 16:56:28 2024 +0100 +++ b/Makefile Tue Feb 20 21:28:56 2024 +0100 @@ -12,9 +12,9 @@ export BUILDBASE -.PHONY: all gemma gmaggregate client clean +.PHONY: all gemma gmaggregate meshmigrate client clean -all: gemma gmaggregate client +all: gemma gmaggregate meshmigrate client $(ENVWARPPER): @echo "Preparing go build environment:" @@ -34,11 +34,15 @@ gmaggregate: $(ENVWARPPER) cd ./contrib/gmaggregate; "$(ENVWARPPER)" go build +meshmigrate: $(ENVWARPPER) + cd ./cmd/meshmigrate; "$(ENVWARPPER)" go build + client: $(MAKE) -f Makefile.build -C client install: gemma cp cmd/gemma/gemma $(BINDIR) + cp cmd/meshmigrate/meshmigrate $(BINDIR) cp contrib/gmaggregate/gmaggregate $(BINDIR) tar: all @@ -46,6 +50,7 @@ tar --transform "s@^@$${v}/@" \ -cJf "../$${v}.tar.xz" \ cmd/gemma/gemma \ + cmd/meshmigrate/meshmigrate \ contrib/gmaggregate/gmaggregate \ schema style-templates report-templates \ web misc example_conf.toml @@ -53,6 +58,7 @@ clean: $(MAKE) -f Makefile.build -C client $@ rm -f contrib/gmaggregate/gmaggregate + rm -f cmd/meshmigrate/meshmigrate rm -f cmd/gemma/gemma chmod -R u+w "$(BUILDBASE)" # This is neccessary for deletion to work... rm -rf "$(BUILDBASE)"
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cmd/meshmigrate/main.go Tue Feb 20 21:28:56 2024 +0100 @@ -0,0 +1,286 @@ +// This is Free Software under GNU Affero General Public License v >= 3.0 +// without warranty, see README.md and license for details. +// +// SPDX-License-Identifier: AGPL-3.0-or-later +// License-Filename: LICENSES/AGPL-3.0.txt +// +// Copyright (C) 2018 by via donau +// – Österreichische Wasserstraßen-Gesellschaft mbH +// Software engineering by Intevation GmbH +// +// Author(s): +// * Sascha L. Teichmann <sascha.teichmann@intevation.de> + +// meshmigrate can be used to migrate mesh indices from one version to another. +package main + +import ( + "crypto/sha1" + "database/sql" + "encoding/hex" + "flag" + "fmt" + "log" + "os" + "regexp" + "strconv" + "strings" + + "gemma.intevation.de/gemma/pkg/mesh" + "github.com/jackc/pgx" + "github.com/jackc/pgx/stdlib" +) + +type credentials struct { + host string + port uint + database string + user string + password string +} + +func (c *credentials) openDB() (*sql.DB, error) { + cc, err := pgx.ParseConnectionString("sslmode=prefer") + if err != nil { + return nil, err + } + cc.Host = c.host + cc.Port = uint16(c.port) + cc.User = c.user + cc.Password = c.password + cc.Database = c.database + return stdlib.OpenDB(cc), nil +} + +const ( + fetchSQL = ` +SELECT + id, + coalesce(mesh_index_version, 1) AS mesh_index_version, + mesh_index +FROM waterway.sounding_results +WHERE mesh_index IS NOT NULL AND ` + + updateSQL = ` +UPDATE waterway.sounding_results SET + mesh_index_version = $1, + mesh_index = $2, + mesh_checksum = $3 +WHERE id = $4` +) + +func restore(creds *credentials, dry bool) error { + db, err := creds.openDB() + if err != nil { + return err + } + defer db.Close() + + dir, err := os.Getwd() + if err != nil { + return err + } + log.Println(dir) + entries, err := os.ReadDir(dir) + if err != nil { + return err + } + log.Println(len(entries)) + pattern := regexp.MustCompile(`^mesh-(\d+)-v(\d+)\.idx\.gz$`) + for _, entry := range entries { + name := entry.Name() + m := pattern.FindStringSubmatch(name) + if m == nil { + continue + } + id, err := strconv.ParseInt(m[1], 10, 64) + if err != nil { + return err + } + version, err := strconv.ParseInt(m[2], 10, 64) + if err != nil { + return err + } + data, err := os.ReadFile(name) + if err != nil { + return err + } + h := sha1.New() + h.Write(data) + checksum := hex.EncodeToString(h.Sum(nil)) + log.Printf("restore mesh %d version %d\n", id, version) + if dry { + continue + } + if _, err := db.Exec(updateSQL, version, data, checksum, id); err != nil { + return err + } + } + return nil +} + +func process( + creds *credentials, + to int, + ids []int64, + limit int, + dry, backup bool, +) error { + db, err := creds.openDB() + if err != nil { + return err + } + defer db.Close() + + sql := fetchSQL + fmt.Sprintf("coalesce(mesh_index_version, 1) < %d", to) + + if len(ids) > 0 { + sql += " AND " + idsFilter(ids) + } + + if limit > -1 { + sql += fmt.Sprintf(" LIMIT %d", limit) + } + + rows, err := db.Query(sql) + if err != nil { + return err + } + defer rows.Close() + + var totalIn, totalOut int64 + migrated := 0 + + for rows.Next() { + var id int64 + var version int + var data []byte + if err := rows.Scan(&id, &version, &data); err != nil { + return err + } + if len(data) == 0 { + log.Printf("mesh %d is empty\n", id) + continue + } + log.Printf("processing mesh %d\n", id) + totalIn += int64(len(data)) + migrated++ + if backup { + fname := fmt.Sprintf("mesh-%d-v%d.idx.gz", id, version) + if err := os.WriteFile(fname, data, 0666); err != nil { + return err + } + } + src := new(mesh.STRTree) + if err := src.FromBytes(data, version); err != nil { + return err + } + src.OptimizeForSerialization(to) + out, newVersion, err := src.Bytes(to) + if err != nil { + return err + } + totalOut += int64(len(out)) + if backup { + fname := fmt.Sprintf("migrated-mesh-%d-v%d.idx.gz", id, newVersion) + if err := os.WriteFile(fname, out, 0666); err != nil { + return err + } + } + if dry { + continue + } + h := sha1.New() + h.Write(out) + checksum := hex.EncodeToString(h.Sum(nil)) + if _, err := db.Exec(updateSQL, newVersion, out, checksum, id); err != nil { + return err + } + } + if rows.Err(); err != nil { + return err + } + log.Printf("migrated meshes: %d\n", migrated) + log.Printf("in: %d (%.2f MB)\n", totalIn, float64(totalIn)/(1024*1024)) + log.Printf("out: %d (%.2f MB)\n", totalOut, float64(totalOut)/(1024*1024)) + log.Printf("ratio: %.2f%%\n", float64(totalOut)/float64(totalIn)*100) + + return nil +} + +func idsFilter(ids []int64) string { + if len(ids) == 0 { + return "" + } + var b strings.Builder + for i, id := range ids { + if i > 0 { + b.WriteByte(',') + } + b.WriteString(strconv.FormatInt(id, 10)) + } + return "id IN (" + b.String() + ")" +} + +func check(err error) { + if err != nil { + log.Fatalf("error: %v\n", err) + } +} + +func toIDs(s string) ([]int64, error) { + if s == "" { + return nil, nil + } + var ids []int64 + for _, f := range strings.Split(s, ",") { + f = strings.TrimSpace(f) + id, err := strconv.ParseInt(f, 10, 64) + if err != nil { + return nil, err + } + ids = append(ids, id) + } + return ids, nil +} + +func checkMode(mode string) error { + switch mode { + case "migrate", "restore": + return nil + default: + return fmt.Errorf("unknown mode %q", mode) + } +} + +func main() { + var ( + creds credentials + idsS string + limit int + dry bool + backup bool + to int + mode string + ) + flag.StringVar(&creds.host, "host", "localhost", "host of the database server") + flag.UintVar(&creds.port, "port", 5432, "port of the database server") + flag.StringVar(&creds.database, "database", "gemma", "database name") + flag.StringVar(&creds.user, "user", "gemma", "database user") + flag.StringVar(&creds.password, "password", "gemma", "database user password") + flag.IntVar(&limit, "limit", -1, "limiting number of mesh to migrate (-1: no limit)") + flag.StringVar(&idsS, "ids", "", "filter ids (empty: no ids)") + flag.BoolVar(&dry, "dry", false, "to a dry run") + flag.BoolVar(&backup, "backup", true, "store backup in file system") + flag.IntVar(&to, "to", 2, "version to store") + flag.StringVar(&mode, "mode", "migrate", "operation mode: migrate, restore") + flag.Parse() + ids, err := toIDs(idsS) + check(err) + check(checkMode(mode)) + if mode == "migrate" { + check(process(&creds, to, ids, limit, dry, backup)) + } else { + check(restore(&creds, dry)) + } +}
--- a/go.mod Wed Feb 14 16:56:28 2024 +0100 +++ b/go.mod Tue Feb 20 21:28:56 2024 +0100 @@ -1,39 +1,57 @@ module gemma.intevation.de/gemma -go 1.13 +go 1.21 require ( github.com/PaesslerAG/gval v1.1.1 - github.com/cockroachdb/apd v1.1.0 // indirect github.com/fatih/structs v1.1.0 github.com/fogleman/contourmap v0.0.0-20190814184649-9f61d36c4199 - github.com/gofrs/uuid v3.2.0+incompatible // indirect github.com/gorilla/mux v1.8.0 - github.com/jackc/fake v0.0.0-20150926172116-812a484cc733 // indirect github.com/jackc/pgx v3.6.2+incompatible github.com/jonas-p/go-shp v0.1.2-0.20190401125246-9fd306ae10a6 - github.com/lib/pq v1.2.0 // indirect github.com/mitchellh/go-homedir v1.1.0 - github.com/pelletier/go-toml/v2 v2.0.2 // indirect - github.com/richardlehane/msoleps v1.0.3 // indirect github.com/rs/cors v1.8.2 github.com/sergi/go-diff v1.0.0 - github.com/shopspring/decimal v1.3.1 // indirect - github.com/spf13/afero v1.9.2 // indirect github.com/spf13/cobra v1.5.0 github.com/spf13/viper v1.12.0 - github.com/subosito/gotenv v1.4.0 // indirect github.com/tidwall/rtree v1.6.0 - github.com/xuri/efp v0.0.0-20220603152613-6918739fd470 // indirect github.com/xuri/excelize/v2 v2.4.1 go.etcd.io/bbolt v1.3.6 - golang.org/x/crypto v0.0.0-20220722155217-630584e8d5aa // indirect golang.org/x/net v0.0.0-20220805013720-a33c5aa5df48 - golang.org/x/sys v0.0.0-20220804214406-8e32c043e418 // indirect gonum.org/v1/gonum v0.11.0 - gopkg.in/alexcesaro/quotedprintable.v3 v3.0.0-20150716171945-2caba252f4dc // indirect gopkg.in/gomail.v2 v2.0.0-20160411212932-81ebce5c23df - gopkg.in/ini.v1 v1.66.6 // indirect gopkg.in/robfig/cron.v1 v1.2.0 gopkg.in/yaml.v2 v2.4.0 ) + +require ( + github.com/cockroachdb/apd v1.1.0 // indirect + github.com/fsnotify/fsnotify v1.5.4 // indirect + github.com/gofrs/uuid v3.2.0+incompatible // indirect + github.com/hashicorp/hcl v1.0.0 // indirect + github.com/inconshreveable/mousetrap v1.0.0 // indirect + github.com/jackc/fake v0.0.0-20150926172116-812a484cc733 // indirect + github.com/lib/pq v1.2.0 // indirect + github.com/magiconair/properties v1.8.6 // indirect + github.com/mitchellh/mapstructure v1.5.0 // indirect + github.com/mohae/deepcopy v0.0.0-20170929034955-c48cc78d4826 // indirect + github.com/pelletier/go-toml v1.9.5 // indirect + github.com/pelletier/go-toml/v2 v2.0.2 // indirect + github.com/pkg/errors v0.9.1 // indirect + github.com/richardlehane/mscfb v1.0.3 // indirect + github.com/richardlehane/msoleps v1.0.3 // indirect + github.com/shopspring/decimal v1.3.1 // indirect + github.com/spf13/afero v1.9.2 // indirect + github.com/spf13/cast v1.5.0 // indirect + github.com/spf13/jwalterweatherman v1.1.0 // indirect + github.com/spf13/pflag v1.0.5 // indirect + github.com/subosito/gotenv v1.4.0 // indirect + github.com/tidwall/geoindex v1.6.1 // indirect + github.com/xuri/efp v0.0.0-20220603152613-6918739fd470 // indirect + golang.org/x/crypto v0.0.0-20220722155217-630584e8d5aa // indirect + golang.org/x/sys v0.0.0-20220804214406-8e32c043e418 // indirect + golang.org/x/text v0.3.7 // indirect + gopkg.in/alexcesaro/quotedprintable.v3 v3.0.0-20150716171945-2caba252f4dc // indirect + gopkg.in/ini.v1 v1.66.6 // indirect + gopkg.in/yaml.v3 v3.0.1 // indirect +)
--- a/go.sum Wed Feb 14 16:56:28 2024 +0100 +++ b/go.sum Tue Feb 20 21:28:56 2024 +0100 @@ -17,32 +17,14 @@ cloud.google.com/go v0.72.0/go.mod h1:M+5Vjvlc2wnp6tjzE102Dw08nGShTscUx2nZMufOKPI= cloud.google.com/go v0.74.0/go.mod h1:VV1xSbzvo+9QJOxLDaJfTjx5e+MePCpCWwvftOeQmWk= cloud.google.com/go v0.75.0/go.mod h1:VGuuCn7PG0dwsd5XPVm2Mm3wlh3EL55/79EKB6hlPTY= -cloud.google.com/go v0.78.0/go.mod h1:QjdrLG0uq+YwhjoVOLsS1t7TW8fs36kLs4XO5R5ECHg= -cloud.google.com/go v0.79.0/go.mod h1:3bzgcEeQlzbuEAYu4mrWhKqWjmpprinYgKJLgKHnbb8= -cloud.google.com/go v0.81.0/go.mod h1:mk/AM35KwGk/Nm2YSeZbxXdrNK3KZOYHmLkOqC2V6E0= -cloud.google.com/go v0.83.0/go.mod h1:Z7MJUsANfY0pYPdw0lbnivPx4/vhy/e2FEkSkF7vAVY= -cloud.google.com/go v0.84.0/go.mod h1:RazrYuxIK6Kb7YrzzhPoLmCVzl7Sup4NrbKPg8KHSUM= -cloud.google.com/go v0.87.0/go.mod h1:TpDYlFy7vuLzZMMZ+B6iRiELaY7z/gJPaqbMx6mlWcY= -cloud.google.com/go v0.90.0/go.mod h1:kRX0mNRHe0e2rC6oNakvwQqzyDmg57xJ+SZU1eT2aDQ= -cloud.google.com/go v0.93.3/go.mod h1:8utlLll2EF5XMAV15woO4lSbWQlk8rer9aLOfLh7+YI= -cloud.google.com/go v0.94.1/go.mod h1:qAlAugsXlC+JWO+Bke5vCtc9ONxjQT3drlTTnAplMW4= -cloud.google.com/go v0.97.0/go.mod h1:GF7l59pYBVlXQIBLx3a761cZ41F9bBH3JUlihCt2Udc= -cloud.google.com/go v0.99.0/go.mod h1:w0Xx2nLzqWJPuozYQX+hFfCSI8WioryfRDzkoI/Y2ZA= -cloud.google.com/go v0.100.2/go.mod h1:4Xra9TjzAeYHrl5+oeLlzbM2k3mjVhZh4UqTZ//w99A= cloud.google.com/go/bigquery v1.0.1/go.mod h1:i/xbL2UlR5RvWAURpBYZTtm/cXjCha9lbfbpx4poX+o= cloud.google.com/go/bigquery v1.3.0/go.mod h1:PjpwJnslEMmckchkHFfq+HTD2DmtT67aNFKH1/VBDHE= cloud.google.com/go/bigquery v1.4.0/go.mod h1:S8dzgnTigyfTmLBfrtrhyYhwRxG72rYxvftPBK2Dvzc= cloud.google.com/go/bigquery v1.5.0/go.mod h1:snEHRnqQbz117VIFhE8bmtwIDY80NLUZUMb4Nv6dBIg= cloud.google.com/go/bigquery v1.7.0/go.mod h1://okPTzCYNXSlb24MZs83e2Do+h+VXtc4gLoIoXIAPc= cloud.google.com/go/bigquery v1.8.0/go.mod h1:J5hqkt3O0uAFnINi6JXValWIb1v0goeZM77hZzJN/fQ= -cloud.google.com/go/compute v0.1.0/go.mod h1:GAesmwr110a34z04OlxYkATPBEfVhkymfTBXtfbBFow= -cloud.google.com/go/compute v1.3.0/go.mod h1:cCZiE1NHEtai4wiufUhW8I8S1JKkAnhnQJWM7YD99wM= -cloud.google.com/go/compute v1.5.0/go.mod h1:9SMHyhJlzhlkJqrPAc839t2BZFTSk6Jdj6mkzQJeu0M= -cloud.google.com/go/compute v1.6.0/go.mod h1:T29tfhtVbq1wvAPo0E3+7vhgmkOYeXjhFvz/FMzPu0s= -cloud.google.com/go/compute v1.6.1/go.mod h1:g85FgpzFvNULZ+S8AYq87axRKuf2Kh7deLqV/jJ3thU= cloud.google.com/go/datastore v1.0.0/go.mod h1:LXYbyblFSglQ5pkeyhO+Qmw7ukd3C+pD7TKLgZqpHYE= cloud.google.com/go/datastore v1.1.0/go.mod h1:umbIZjpQpHh4hmRpGhH4tLFup+FVzqBi1b3c64qFpCk= -cloud.google.com/go/firestore v1.6.1/go.mod h1:asNXNOzBdyVQmEU+ggO8UPodTkEVFW5Qx+rwHnAz+EY= cloud.google.com/go/pubsub v1.0.1/go.mod h1:R0Gpsv3s54REJCy4fxDixWD93lHJMoZTyQ2kNxGRt3I= cloud.google.com/go/pubsub v1.1.0/go.mod h1:EwwdRX2sKPjnvnqCa270oGRyludottCI76h+R3AArQw= cloud.google.com/go/pubsub v1.2.0/go.mod h1:jhfEVHT8odbXTkndysNHCcx0awwzvfOlguIAii9o8iA= @@ -54,119 +36,49 @@ cloud.google.com/go/storage v1.10.0/go.mod h1:FLPqc6j+Ki4BU591ie1oL6qBQGu2Bl/tZ9ullr3+Kg0= cloud.google.com/go/storage v1.14.0/go.mod h1:GrKmX003DSIwi9o29oFT7YDnHYwZoctc3fOKtUw0Xmo= dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU= -gioui.org v0.0.0-20210308172011-57750fc8a0a6/go.mod h1:RSH6KIUZ0p2xy5zHDxgAM4zumjgTw83q2ge/PI+yyw8= -git.sr.ht/~sbinet/gg v0.3.1/go.mod h1:KGYtlADtqsqANL9ueOFkWymvzUvLMQllU5Ixo+8v3pc= github.com/BurntSushi/toml v0.3.1/go.mod h1:xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU= github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo= -github.com/DataDog/datadog-go v3.2.0+incompatible/go.mod h1:LButxg5PwREeZtORoXG3tL4fMGNddJ+vMq1mwgfaqoQ= -github.com/OneOfOne/xxhash v1.2.2/go.mod h1:HSdplMjZKSmBqAxg5vPj2TmRDmfkzw+cTzAElWljhcU= github.com/PaesslerAG/gval v1.1.1 h1:4d7pprU9876+m3rc08X33UjGip8oV1kkm8Gh5GBuTss= github.com/PaesslerAG/gval 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h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= github.com/google/go-cmp v0.5.1/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= github.com/google/go-cmp v0.5.2/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= -github.com/google/go-cmp v0.5.3/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= github.com/google/go-cmp v0.5.4/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= -github.com/google/go-cmp v0.5.5/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= -github.com/google/go-cmp v0.5.6/go.mod h1:v8dTdLbMG2kIc/vJvl+f65V22dbkXbowE6jgT/gNBxE= -github.com/google/go-cmp v0.5.7/go.mod h1:n+brtR0CgQNWTVd5ZUFpTBC8YFBDLK/h/bpaJ8/DtOE= github.com/google/go-cmp v0.5.8 h1:e6P7q2lk1O+qJJb4BtCQXlK8vWEO8V1ZeuEdJNOqZyg= github.com/google/go-cmp v0.5.8/go.mod h1:17dUlkBOakJ0+DkrSSNjCkIjxS6bF9zb3elmeNGIjoY= -github.com/google/gofuzz v1.0.0/go.mod h1:dBl0BpW6vV/+mYPU4Po3pmUjxk6FQPldtuIdl/M65Eg= github.com/google/martian v2.1.0+incompatible/go.mod 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h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74= github.com/yuin/goldmark v1.1.32/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74= github.com/yuin/goldmark v1.2.1/go.mod h1:3hX8gzYuyVAZsxl0MRgGTJEmQBFcNTphYh9decYSb74= -github.com/yuin/goldmark v1.3.5/go.mod h1:mwnBkeHKe2W/ZEtQ+71ViKU8L12m81fl3OWwC1Zlc8k= -github.com/yuin/goldmark v1.4.1/go.mod h1:mwnBkeHKe2W/ZEtQ+71ViKU8L12m81fl3OWwC1Zlc8k= go.etcd.io/bbolt v1.3.6 h1:/ecaJf0sk1l4l6V4awd65v2C3ILy7MSj+s/x1ADCIMU= go.etcd.io/bbolt v1.3.6/go.mod h1:qXsaaIqmgQH0T+OPdb99Bf+PKfBBQVAdyD6TY9G8XM4= -go.etcd.io/etcd/api/v3 v3.5.4/go.mod h1:5GB2vv4A4AOn3yk7MftYGHkUfGtDHnEraIjym4dYz5A= -go.etcd.io/etcd/client/pkg/v3 v3.5.4/go.mod h1:IJHfcCEKxYu1Os13ZdwCwIUTUVGYTSAM3YSwc9/Ac1g= -go.etcd.io/etcd/client/v2 v2.305.4/go.mod h1:Ud+VUwIi9/uQHOMA+4ekToJ12lTxlv0zB/+DHwTGEbU= -go.etcd.io/etcd/client/v3 v3.5.4/go.mod h1:ZaRkVgBZC+L+dLCjTcF1hRXpgZXQPOvnA/Ak/gq3kiY= go.opencensus.io v0.21.0/go.mod h1:mSImk1erAIZhrmZN+AvHh14ztQfjbGwt4TtuofqLduU= 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h1:3xt1FjdF8hUf6vQPIChWIBhFzV8gjjsPE/fR3IyQdNY= golang.org/x/mobile v0.0.0-20190312151609-d3739f865fa6/go.mod h1:z+o9i4GpDbdi3rU15maQ/Ox0txvL9dWGYEHz965HBQE= golang.org/x/mobile v0.0.0-20190719004257-d2bd2a29d028/go.mod h1:E/iHnbuqvinMTCcRqshq8CkpyQDoeVncDDYHnLhea+o= golang.org/x/mod v0.0.0-20190513183733-4bf6d317e70e/go.mod h1:mXi4GBBbnImb6dmsKGUJ2LatrhH/nqhxcFungHvyanc= @@ -537,11 +287,8 @@ golang.org/x/mod v0.3.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= golang.org/x/mod v0.4.0/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= golang.org/x/mod v0.4.1/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= -golang.org/x/mod v0.4.2/go.mod h1:s0Qsj1ACt9ePp/hMypM3fl4fZqREWJwdYDEqhRiZZUA= -golang.org/x/mod v0.5.1/go.mod h1:5OXOZSfqPIIbmVBIIKWRFfZjPR0E5r58TLhUjH0a2Ro= golang.org/x/net v0.0.0-20180724234803-3673e40ba225/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4= golang.org/x/net v0.0.0-20180826012351-8a410e7b638d/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4= -golang.org/x/net v0.0.0-20181114220301-adae6a3d119a/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4= golang.org/x/net v0.0.0-20190108225652-1e06a53dbb7e/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4= golang.org/x/net v0.0.0-20190213061140-3a22650c66bd/go.mod h1:mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4= golang.org/x/net v0.0.0-20190311183353-d8887717615a/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg= @@ -549,11 +296,9 @@ golang.org/x/net v0.0.0-20190501004415-9ce7a6920f09/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg= golang.org/x/net v0.0.0-20190503192946-f4e77d36d62c/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg= golang.org/x/net v0.0.0-20190603091049-60506f45cf65/go.mod h1:HSz+uSET+XFnRR8LxR5pz3Of3rY3CfYBVs4xY44aLks= -golang.org/x/net v0.0.0-20190613194153-d28f0bde5980/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= golang.org/x/net v0.0.0-20190628185345-da137c7871d7/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= golang.org/x/net v0.0.0-20190724013045-ca1201d0de80/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= -golang.org/x/net v0.0.0-20190923162816-aa69164e4478/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= golang.org/x/net v0.0.0-20191209160850-c0dbc17a3553/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= golang.org/x/net v0.0.0-20200114155413-6afb5195e5aa/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= golang.org/x/net v0.0.0-20200202094626-16171245cfb2/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s= @@ -570,24 +315,10 @@ golang.org/x/net v0.0.0-20200822124328-c89045814202/go.mod h1:/O7V0waA8r7cgGh81Ro3o1hOxt32SMVPicZroKQ2sZA= golang.org/x/net v0.0.0-20201021035429-f5854403a974/go.mod h1:sp8m0HH+o8qH0wwXwYZr8TS3Oi6o0r6Gce1SSxlDquU= golang.org/x/net v0.0.0-20201031054903-ff519b6c9102/go.mod 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h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y= golang.org/x/net v0.0.0-20210726213435-c6fcb2dbf985/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y= -golang.org/x/net v0.0.0-20211015210444-4f30a5c0130f/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y= -golang.org/x/net v0.0.0-20211112202133-69e39bad7dc2/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y= -golang.org/x/net v0.0.0-20220127200216-cd36cc0744dd/go.mod h1:CfG3xpIq0wQ8r1q4Su4UZFWDARRcnwPjda9FqA0JpMk= -golang.org/x/net v0.0.0-20220225172249-27dd8689420f/go.mod h1:CfG3xpIq0wQ8r1q4Su4UZFWDARRcnwPjda9FqA0JpMk= -golang.org/x/net v0.0.0-20220325170049-de3da57026de/go.mod h1:CfG3xpIq0wQ8r1q4Su4UZFWDARRcnwPjda9FqA0JpMk= -golang.org/x/net v0.0.0-20220412020605-290c469a71a5/go.mod h1:CfG3xpIq0wQ8r1q4Su4UZFWDARRcnwPjda9FqA0JpMk= -golang.org/x/net v0.0.0-20220425223048-2871e0cb64e4/go.mod h1:CfG3xpIq0wQ8r1q4Su4UZFWDARRcnwPjda9FqA0JpMk= -golang.org/x/net v0.0.0-20220520000938-2e3eb7b945c2/go.mod h1:CfG3xpIq0wQ8r1q4Su4UZFWDARRcnwPjda9FqA0JpMk= golang.org/x/net v0.0.0-20220805013720-a33c5aa5df48 h1:N9Vc/rorQUDes6B9CNdIxAn5jODGj2wzfrei2x4wNj4= golang.org/x/net v0.0.0-20220805013720-a33c5aa5df48/go.mod h1:YDH+HFinaLZZlnHAfSS6ZXJJ9M9t4Dl22yv3iI2vPwk= golang.org/x/oauth2 v0.0.0-20180821212333-d2e6202438be/go.mod h1:N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U= @@ -599,17 +330,6 @@ golang.org/x/oauth2 v0.0.0-20201109201403-9fd604954f58/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= golang.org/x/oauth2 v0.0.0-20201208152858-08078c50e5b5/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= golang.org/x/oauth2 v0.0.0-20210218202405-ba52d332ba99/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20210220000619-9bb904979d93/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20210313182246-cd4f82c27b84/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20210514164344-f6687ab2804c/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20210628180205-a41e5a781914/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20210805134026-6f1e6394065a/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20210819190943-2bc19b11175f/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20211005180243-6b3c2da341f1/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20211104180415-d3ed0bb246c8/go.mod h1:KelEdhl1UZF7XfJ4dDtk6s++YSgaE7mD/BuKKDLBl4A= -golang.org/x/oauth2 v0.0.0-20220223155221-ee480838109b/go.mod h1:DAh4E804XQdzx2j+YRIaUnCqCV2RuMz24cGBJ5QYIrc= -golang.org/x/oauth2 v0.0.0-20220309155454-6242fa91716a/go.mod h1:DAh4E804XQdzx2j+YRIaUnCqCV2RuMz24cGBJ5QYIrc= -golang.org/x/oauth2 v0.0.0-20220411215720-9780585627b5/go.mod h1:DAh4E804XQdzx2j+YRIaUnCqCV2RuMz24cGBJ5QYIrc= golang.org/x/sync v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20181108010431-42b317875d0f/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20181221193216-37e7f081c4d4/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= @@ -620,34 +340,20 @@ golang.org/x/sync v0.0.0-20200625203802-6e8e738ad208/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20201020160332-67f06af15bc9/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= golang.org/x/sync v0.0.0-20201207232520-09787c993a3a/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= -golang.org/x/sync v0.0.0-20210220032951-036812b2e83c/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= -golang.org/x/sync v0.0.0-20220513210516-0976fa681c29/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM= -golang.org/x/sys v0.0.0-20180823144017-11551d06cbcc/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY= golang.org/x/sys v0.0.0-20180830151530-49385e6e1522/go.mod 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h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= @@ -658,8 +364,6 @@ golang.org/x/sys v0.0.0-20200511232937-7e40ca221e25/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20200515095857-1151b9dac4a9/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20200523222454-059865788121/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= -golang.org/x/sys v0.0.0-20200615200032-f1bc736245b1/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= -golang.org/x/sys v0.0.0-20200625212154-ddb9806d33ae/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20200803210538-64077c9b5642/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20200905004654-be1d3432aa8f/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= golang.org/x/sys v0.0.0-20200923182605-d9f96fdee20d/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs= @@ -668,63 +372,28 @@ golang.org/x/sys 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golang.org/x/tools v0.0.0-20200618134242-20370b0cb4b2/go.mod h1:EkVYQZoAsY45+roYkvgYkIh4xh/qjgUK9TdY2XT94GE= -golang.org/x/tools v0.0.0-20200619180055-7c47624df98f/go.mod h1:EkVYQZoAsY45+roYkvgYkIh4xh/qjgUK9TdY2XT94GE= golang.org/x/tools v0.0.0-20200729194436-6467de6f59a7/go.mod h1:njjCfa9FT2d7l9Bc6FUM5FLjQPp3cFF28FI3qnDFljA= golang.org/x/tools v0.0.0-20200804011535-6c149bb5ef0d/go.mod h1:njjCfa9FT2d7l9Bc6FUM5FLjQPp3cFF28FI3qnDFljA= golang.org/x/tools v0.0.0-20200825202427-b303f430e36d/go.mod h1:njjCfa9FT2d7l9Bc6FUM5FLjQPp3cFF28FI3qnDFljA= @@ -771,30 +437,14 @@ golang.org/x/tools v0.0.0-20201201161351-ac6f37ff4c2a/go.mod h1:emZCQorbCU4vsT4fOWvOPXz4eW1wZW4PmDk9uLelYpA= golang.org/x/tools v0.0.0-20201208233053-a543418bbed2/go.mod h1:emZCQorbCU4vsT4fOWvOPXz4eW1wZW4PmDk9uLelYpA= golang.org/x/tools v0.0.0-20210105154028-b0ab187a4818/go.mod h1:emZCQorbCU4vsT4fOWvOPXz4eW1wZW4PmDk9uLelYpA= -golang.org/x/tools v0.0.0-20210106214847-113979e3529a/go.mod 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v0.0.0-20190515093506-e2840ee46a6b/go.mod h1:Wt8AAjI+ypCyYX3nZBvf6cAIx93T+c/OS2HFAYskSZc= -gonum.org/v1/plot v0.9.0/go.mod h1:3Pcqqmp6RHvJI72kgb8fThyUnav364FOsdDo2aGW5lY= -gonum.org/v1/plot v0.10.1/go.mod h1:VZW5OlhkL1mysU9vaqNHnsy86inf6Ot+jB3r+BczCEo= google.golang.org/api v0.4.0/go.mod h1:8k5glujaEP+g9n7WNsDg8QP6cUVNI86fCNMcbazEtwE= google.golang.org/api v0.7.0/go.mod h1:WtwebWUNSVBH/HAw79HIFXZNqEvBhG+Ra+ax0hx3E3M= google.golang.org/api v0.8.0/go.mod h1:o4eAsZoiT+ibD93RtjEohWalFOjRDx6CVaqeizhEnKg= @@ -814,26 +464,6 @@ google.golang.org/api v0.35.0/go.mod h1:/XrVsuzM0rZmrsbjJutiuftIzeuTQcEeaYcSk/mQ1dg= google.golang.org/api v0.36.0/go.mod h1:+z5ficQTmoYpPn8LCUNVpK5I7hwkpjbcgqA7I34qYtE= google.golang.org/api v0.40.0/go.mod h1:fYKFpnQN0DsDSKRVRcQSDQNtqWPfM9i+zNPxepjRCQ8= -google.golang.org/api v0.41.0/go.mod h1:RkxM5lITDfTzmyKFPt+wGrCJbVfniCr2ool8kTBzRTU= -google.golang.org/api v0.43.0/go.mod h1:nQsDGjRXMo4lvh5hP0TKqF244gqhGcr/YSIykhUk/94= -google.golang.org/api v0.47.0/go.mod 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-google.golang.org/api v0.70.0/go.mod h1:Bs4ZM2HGifEvXwd50TtW70ovgJffJYw2oRCOFU/SkfA= -google.golang.org/api v0.71.0/go.mod h1:4PyU6e6JogV1f9eA4voyrTY2batOLdgZ5qZ5HOCc4j8= -google.golang.org/api v0.74.0/go.mod h1:ZpfMZOVRMywNyvJFeqL9HRWBgAuRfSjJFpe9QtRRyDs= -google.golang.org/api v0.75.0/go.mod h1:pU9QmyHLnzlpar1Mjt4IbapUCy8J+6HD6GeELN69ljA= -google.golang.org/api v0.78.0/go.mod h1:1Sg78yoMLOhlQTeF+ARBoytAcH1NNyyl390YMy6rKmw= -google.golang.org/api v0.81.0/go.mod h1:FA6Mb/bZxj706H2j+j2d6mHEEaHBmbbWnkfvmorOCko= google.golang.org/appengine v1.1.0/go.mod h1:EbEs0AVv82hx2wNQdGPgUI5lhzA/G0D9YwlJXL52JkM= google.golang.org/appengine v1.4.0/go.mod h1:xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4= google.golang.org/appengine v1.5.0/go.mod h1:xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4= @@ -864,7 +494,6 @@ google.golang.org/genproto v0.0.0-20200331122359-1ee6d9798940/go.mod h1:55QSHmfGQM9UVYDPBsyGGes0y52j32PQ3BqQfXhyH3c= google.golang.org/genproto v0.0.0-20200430143042-b979b6f78d84/go.mod 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-google.golang.org/genproto v0.0.0-20220310185008-1973136f34c6/go.mod h1:kGP+zUP2Ddo0ayMi4YuN7C3WZyJvGLZRh8Z5wnAqvEI= -google.golang.org/genproto v0.0.0-20220324131243-acbaeb5b85eb/go.mod h1:hAL49I2IFola2sVEjAn7MEwsja0xp51I0tlGAf9hz4E= -google.golang.org/genproto v0.0.0-20220407144326-9054f6ed7bac/go.mod h1:8w6bsBMX6yCPbAVTeqQHvzxW0EIFigd5lZyahWgyfDo= -google.golang.org/genproto v0.0.0-20220413183235-5e96e2839df9/go.mod h1:8w6bsBMX6yCPbAVTeqQHvzxW0EIFigd5lZyahWgyfDo= -google.golang.org/genproto v0.0.0-20220414192740-2d67ff6cf2b4/go.mod h1:8w6bsBMX6yCPbAVTeqQHvzxW0EIFigd5lZyahWgyfDo= -google.golang.org/genproto v0.0.0-20220421151946-72621c1f0bd3/go.mod h1:8w6bsBMX6yCPbAVTeqQHvzxW0EIFigd5lZyahWgyfDo= -google.golang.org/genproto v0.0.0-20220429170224-98d788798c3e/go.mod h1:8w6bsBMX6yCPbAVTeqQHvzxW0EIFigd5lZyahWgyfDo= -google.golang.org/genproto v0.0.0-20220505152158-f39f71e6c8f3/go.mod h1:RAyBrSAP7Fh3Nc84ghnVLDPuV51xc9agzmm4Ph6i0Q4= -google.golang.org/genproto v0.0.0-20220519153652-3a47de7e79bd/go.mod h1:RAyBrSAP7Fh3Nc84ghnVLDPuV51xc9agzmm4Ph6i0Q4= google.golang.org/grpc v1.19.0/go.mod h1:mqu4LbDTu4XGKhr4mRzUsmM4RtVoemTSY81AxZiDr8c= google.golang.org/grpc v1.20.1/go.mod h1:10oTOabMzJvdu6/UiuZezV6QK5dSlG84ov/aaiqXj38= google.golang.org/grpc v1.21.1/go.mod h1:oYelfM1adQP15Ek0mdvEgi9Df8B9CZIaU1084ijfRaM= @@ -932,24 +520,9 @@ google.golang.org/grpc v1.30.0/go.mod h1:N36X2cJ7JwdamYAgDz+s+rVMFjt3numwzf/HckM8pak= google.golang.org/grpc v1.31.0/go.mod h1:N36X2cJ7JwdamYAgDz+s+rVMFjt3numwzf/HckM8pak= google.golang.org/grpc v1.31.1/go.mod h1:N36X2cJ7JwdamYAgDz+s+rVMFjt3numwzf/HckM8pak= -google.golang.org/grpc v1.33.1/go.mod h1:fr5YgcSWrqhRRxogOsw7RzIpsmvOZ6IcH4kBYTpR3n0= google.golang.org/grpc v1.33.2/go.mod h1:JMHMWHQWaTccqQQlmk3MJZS+GWXOdAesneDmEnv2fbc= google.golang.org/grpc v1.34.0/go.mod h1:WotjhfgOW/POjDeRt8vscBtXq+2VjORFy659qA51WJ8= google.golang.org/grpc v1.35.0/go.mod h1:qjiiYl8FncCW8feJPdyg3v6XW24KsRHe+dy9BAGRRjU= -google.golang.org/grpc v1.36.0/go.mod h1:qjiiYl8FncCW8feJPdyg3v6XW24KsRHe+dy9BAGRRjU= -google.golang.org/grpc v1.36.1/go.mod h1:qjiiYl8FncCW8feJPdyg3v6XW24KsRHe+dy9BAGRRjU= -google.golang.org/grpc v1.37.0/go.mod h1:NREThFqKR1f3iQ6oBuvc5LadQuXVGo9rkm5ZGrQdJfM= -google.golang.org/grpc v1.37.1/go.mod h1:NREThFqKR1f3iQ6oBuvc5LadQuXVGo9rkm5ZGrQdJfM= -google.golang.org/grpc v1.38.0/go.mod h1:NREThFqKR1f3iQ6oBuvc5LadQuXVGo9rkm5ZGrQdJfM= -google.golang.org/grpc v1.39.0/go.mod h1:PImNr+rS9TWYb2O4/emRugxiyHZ5JyHW5F+RPnDzfrE= -google.golang.org/grpc v1.39.1/go.mod h1:PImNr+rS9TWYb2O4/emRugxiyHZ5JyHW5F+RPnDzfrE= -google.golang.org/grpc v1.40.0/go.mod h1:ogyxbiOoUXAkP+4+xa6PZSE9DZgIHtSpzjDTB9KAK34= -google.golang.org/grpc v1.40.1/go.mod h1:ogyxbiOoUXAkP+4+xa6PZSE9DZgIHtSpzjDTB9KAK34= -google.golang.org/grpc v1.44.0/go.mod h1:k+4IHHFw41K8+bbowsex27ge2rCb65oeWqe4jJ590SU= -google.golang.org/grpc v1.45.0/go.mod h1:lN7owxKUQEqMfSyQikvvk5tf/6zMPsrK+ONuO11+0rQ= -google.golang.org/grpc v1.46.0/go.mod h1:vN9eftEi1UMyUsIF80+uQXhHjbXYbm0uXoFCACuMGWk= -google.golang.org/grpc v1.46.2/go.mod h1:vN9eftEi1UMyUsIF80+uQXhHjbXYbm0uXoFCACuMGWk= -google.golang.org/grpc/cmd/protoc-gen-go-grpc v1.1.0/go.mod h1:6Kw0yEErY5E/yWrBtf03jp27GLLJujG4z/JK95pnjjw= google.golang.org/protobuf v0.0.0-20200109180630-ec00e32a8dfd/go.mod h1:DFci5gLYBciE7Vtevhsrf46CRTquxDuWsQurQQe4oz8= google.golang.org/protobuf v0.0.0-20200221191635-4d8936d0db64/go.mod h1:kwYJMbMJ01Woi6D6+Kah6886xMZcty6N08ah7+eCXa0= google.golang.org/protobuf v0.0.0-20200228230310-ab0ca4ff8a60/go.mod h1:cfTl7dwQJ+fmap5saPgwCLgHXTUD7jkjRqWcaiX5VyM= @@ -960,37 +533,22 @@ google.golang.org/protobuf v1.23.1-0.20200526195155-81db48ad09cc/go.mod h1:EGpADcykh3NcUnDUJcl1+ZksZNG86OlYog2l/sGQquU= google.golang.org/protobuf v1.24.0/go.mod h1:r/3tXBNzIEhYS9I1OUVjXDlt8tc493IdKGjtUeSXeh4= google.golang.org/protobuf v1.25.0/go.mod h1:9JNX74DMeImyA3h4bdi1ymwjUzf21/xIlbajtzgsN7c= -google.golang.org/protobuf v1.26.0-rc.1/go.mod h1:jlhhOSvTdKEhbULTjvd4ARK9grFBp09yW+WbY/TyQbw= -google.golang.org/protobuf v1.26.0/go.mod h1:9q0QmTI4eRPtz6boOQmLYwt+qCgq0jsYwAQnmE0givc= -google.golang.org/protobuf v1.27.1/go.mod h1:9q0QmTI4eRPtz6boOQmLYwt+qCgq0jsYwAQnmE0givc= -google.golang.org/protobuf v1.28.0/go.mod h1:HV8QOd/L58Z+nl8r43ehVNZIU/HEI6OcFqwMG9pJV4I= -gopkg.in/alecthomas/kingpin.v2 v2.2.6/go.mod h1:FMv+mEhP44yOT+4EoQTLFTRgOQ1FBLkstjWtayDeSgw= gopkg.in/alexcesaro/quotedprintable.v3 v3.0.0-20150716171945-2caba252f4dc h1:2gGKlE2+asNV9m7xrywl36YYNnBG5ZQ0r/BOOxqPpmk= gopkg.in/alexcesaro/quotedprintable.v3 v3.0.0-20150716171945-2caba252f4dc/go.mod h1:m7x9LTH6d71AHyAX77c9yqWCCa3UKHcVEj9y7hAtKDk= gopkg.in/check.v1 v0.0.0-20161208181325-20d25e280405/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= +gopkg.in/check.v1 v1.0.0-20180628173108-788fd7840127 h1:qIbj1fsPNlZgppZ+VLlY7N33q108Sa+fhmuc+sWQYwY= gopkg.in/check.v1 v1.0.0-20180628173108-788fd7840127/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= -gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15 h1:YR8cESwS4TdDjEe65xsg0ogRM/Nc3DYOhEAlW+xobZo= -gopkg.in/check.v1 v1.0.0-20190902080502-41f04d3bba15/go.mod h1:Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0= gopkg.in/errgo.v2 v2.1.0/go.mod h1:hNsd1EY+bozCKY1Ytp96fpM3vjJbqLJn88ws8XvfDNI= gopkg.in/gomail.v2 v2.0.0-20160411212932-81ebce5c23df h1:n7WqCuqOuCbNr617RXOY0AWRXxgwEyPp2z+p0+hgMuE= gopkg.in/gomail.v2 v2.0.0-20160411212932-81ebce5c23df/go.mod h1:LRQQ+SO6ZHR7tOkpBDuZnXENFzX8qRjMDMyPD6BRkCw= -gopkg.in/ini.v1 v1.66.4/go.mod h1:pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k= gopkg.in/ini.v1 v1.66.6 h1:LATuAqN/shcYAOkv3wl2L4rkaKqkcgTBQjOyYDvcPKI= gopkg.in/ini.v1 v1.66.6/go.mod h1:pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k= gopkg.in/robfig/cron.v1 v1.2.0 h1:PSJsm0uPEND0Rumxxbo7qNb7bxQUTIWDIdpPS59/tcw= gopkg.in/robfig/cron.v1 v1.2.0/go.mod h1:3I22DCB+7VAStCIqyArwi2xY9a7IioCiNjrsnCqs+HE= -gopkg.in/yaml.v2 v2.2.1/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= gopkg.in/yaml.v2 v2.2.2/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= -gopkg.in/yaml.v2 v2.2.3/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= -gopkg.in/yaml.v2 v2.2.4/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= -gopkg.in/yaml.v2 v2.2.5/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= -gopkg.in/yaml.v2 v2.2.8/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= -gopkg.in/yaml.v2 v2.3.0/go.mod h1:hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI= gopkg.in/yaml.v2 v2.4.0 h1:D8xgwECY7CYvx+Y2n4sBz93Jn9JRvxdiyyo8CTfuKaY= gopkg.in/yaml.v2 v2.4.0/go.mod h1:RDklbk79AGWmwhnvt/jBztapEOGDOx6ZbXqjP6csGnQ= gopkg.in/yaml.v3 v3.0.0-20200313102051-9f266ea9e77c/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= -gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= -gopkg.in/yaml.v3 v3.0.0/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= gopkg.in/yaml.v3 v3.0.1 h1:fxVm/GzAzEWqLHuvctI91KS9hhNmmWOoWu0XTYJS7CA= gopkg.in/yaml.v3 v3.0.1/go.mod h1:K4uyk7z7BCEPqu6E+C64Yfv1cQ7kz7rIZviUmN+EgEM= honnef.co/go/tools v0.0.0-20190102054323-c2f93a96b099/go.mod h1:rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4= @@ -1000,9 +558,6 @@ honnef.co/go/tools v0.0.1-2019.2.3/go.mod h1:a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt0JzvZhAg= honnef.co/go/tools v0.0.1-2020.1.3/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k= honnef.co/go/tools v0.0.1-2020.1.4/go.mod h1:X/FiERA/W4tHapMX5mGpAtMSVEeEUOyHaw9vFzvIQ3k= -honnef.co/go/tools v0.1.3/go.mod h1:NgwopIslSNH47DimFoV78dnkksY2EFtX0ajyb3K/las= rsc.io/binaryregexp v0.2.0/go.mod h1:qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8= -rsc.io/pdf v0.1.1/go.mod h1:n8OzWcQ6Sp37PL01nO98y4iUCRdTGarVfzxY20ICaU4= rsc.io/quote/v3 v3.1.0/go.mod h1:yEA65RcK8LyAZtP9Kv3t0HmxON59tX3rD+tICJqUlj0= rsc.io/sampler v1.3.0/go.mod h1:T1hPZKmBbMNahiBKFy5HrXp6adAjACjK9JXDnKaTXpA= -sigs.k8s.io/yaml v1.2.0/go.mod h1:yfXDCHCao9+ENCvLSE62v9VSji2MKu5jeNfTrofGhJc=
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pkg/common/delta.go Tue Feb 20 21:28:56 2024 +0100 @@ -0,0 +1,37 @@ +// This is Free Software under GNU Affero General Public License v >= 3.0 +// without warranty, see README.md and license for details. +// +// SPDX-License-Identifier: AGPL-3.0-or-later +// License-Filename: LICENSES/AGPL-3.0.txt +// +// Copyright (C) 2024 by via donau +// – Österreichische Wasserstraßen-Gesellschaft mbH +// Software engineering by Intevation GmbH +// +// Author(s): +// * Sascha L. Teichmann <sascha.teichmann@intevation.de> + +package common + +// Delta returns a function which returns its argument when called +// the first time and the delta to the last call afterwards. +func Delta() func(int64) int64 { + var last int64 + return func(x int64) (y int64) { + y = x - last + last = x + return + } +} + +// InvDelta is the inverse function to Delta. A sequence of numbers +// fed into the function generated by InvDelta restores +// the values fed into the function generated by Delta. +func InvDelta() func(int64) int64 { + var last int64 + return func(x int64) (y int64) { + y = x + last + last = y + return + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pkg/common/delta_test.go Tue Feb 20 21:28:56 2024 +0100 @@ -0,0 +1,40 @@ +// This is Free Software under GNU Affero General Public License v >= 3.0 +// without warranty, see README.md and license for details. +// +// SPDX-License-Identifier: AGPL-3.0-or-later +// License-Filename: LICENSES/AGPL-3.0.txt +// +// Copyright (C) 2024 by via donau +// – Österreichische Wasserstraßen-Gesellschaft mbH +// Software engineering by Intevation GmbH +// +// Author(s): +// * Sascha L. Teichmann <sascha.teichmann@intevation.de> + +package common + +import "testing" + +func TestDelta(t *testing.T) { + var ( + input = []int64{1, 2, 3, 2, 1} + want = []int64{1, 1, 1, -1, -1} + ) + delta := Delta() + for i, in := range input { + if got := delta(in); got != want[i] { + t.Errorf("input %d: got %d expected %d", in, got, want[i]) + } + } +} + +func TestInvDelta(t *testing.T) { + input := []int64{1, 2, 3, 2, 1, -10, 100} + delta := Delta() + invDelta := InvDelta() + for _, in := range input { + if got := invDelta(delta(in)); got != in { + t.Errorf("input %d: got %d expected %d", in, got, in) + } + } +}
--- a/pkg/controllers/proxy.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/controllers/proxy.go Tue Feb 20 21:28:56 2024 +0100 @@ -21,7 +21,6 @@ "encoding/base64" "encoding/xml" "io" - "io/ioutil" "net/http" "net/url" "regexp" @@ -138,7 +137,7 @@ if r2, ok := r.(io.ReadCloser); ok { return r2, nil } - return ioutil.NopCloser(r), nil + return io.NopCloser(r), nil }, func(w io.Writer) (io.WriteCloser, error) { if w2, ok := w.(io.WriteCloser); ok {
--- a/pkg/controllers/shapestretches.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/controllers/shapestretches.go Tue Feb 20 21:28:56 2024 +0100 @@ -18,7 +18,6 @@ "database/sql" "fmt" "io" - "io/ioutil" "net/http" "os" "path/filepath" @@ -188,7 +187,7 @@ tmp := config.TmpDir() - dir, err := ioutil.TempDir(tmp, "stretch-download") + dir, err := os.MkdirTemp(tmp, "stretch-download") if err != nil { http.Error( rw, fmt.Sprintf("Cannot create temp dir: %v.", err),
--- a/pkg/controllers/system.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/controllers/system.go Tue Feb 20 21:28:56 2024 +0100 @@ -18,8 +18,8 @@ "context" "database/sql" "fmt" - "io/ioutil" "net/http" + "os" "regexp" "strings" "sync" @@ -90,7 +90,7 @@ var txt []byte - if txt, err = ioutil.ReadFile(path); err != nil { + if txt, err = os.ReadFile(path); err != nil { return } @@ -112,7 +112,7 @@ } var data []byte - if data, err = ioutil.ReadFile(cfg); err != nil { + if data, err = os.ReadFile(cfg); err != nil { return }
--- a/pkg/imports/sr.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/imports/sr.go Tue Feb 20 21:28:56 2024 +0100 @@ -174,7 +174,7 @@ insertMeshSQL = ` UPDATE waterway.sounding_results SET - mesh_checksum = $2, mesh_index = $3 + mesh_checksum = $2, mesh_index = $3, mesh_index_version = $4 WHERE id = $1` repairBoundarySQL = ` @@ -512,9 +512,14 @@ if err := xyz.FromWKB(reproj); err != nil { return nil, err } - feedback.Info("Reprojecting points to EPSG %d took %v.", epsg, time.Since(start)) + + start = time.Now() + xyz = xyz.QuantizeXY(mesh.QuantScale) + feedback.Info("Quantizing points in X/Y to 1/%d took %v.", + mesh.QuantScale, time.Since(start)) + feedback.Info("Number of reprojected points: %d", len(xyz)) feedback.Info("Triangulate XYZ data.") @@ -741,9 +746,11 @@ } if m.SurveyType != models.SurveyTypeMarking { - var index []byte + final.OptimizeForSerialization(-1) - index, err = final.Bytes() + var index []byte + var version int + index, version, err = final.Bytes(-1) if err != nil { return nil, err } @@ -751,7 +758,7 @@ h := sha1.New() h.Write(index) checksum := hex.EncodeToString(h.Sum(nil)) - _, err = tx.ExecContext(ctx, insertMeshSQL, id, checksum, index) + _, err = tx.ExecContext(ctx, insertMeshSQL, id, checksum, index, version) if err != nil { return nil, err }
--- a/pkg/imports/wg.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/imports/wg.go Tue Feb 20 21:28:56 2024 +0100 @@ -180,7 +180,7 @@ ` ) -var continueErr = errors.New("continue") +var errContinue = errors.New("continue") // Do implements the actual import. func (wg *WaterwayGauge) Do( @@ -361,7 +361,7 @@ case err != nil: feedback.Error(pgxutils.ReadableError{Err: err}.Error()) unchanged++ - return continueErr + return errContinue case isNew: var lu *time.Time if dr.Lastupdate != nil { @@ -388,7 +388,7 @@ ); err != nil { key := pgxutils.ReadableError{Err: err}.Error() databaseErrors[key] = append(databaseErrors[key], isrs) - return continueErr + return errContinue } newGauges = append(newGauges, isrs) //feedback.Info("insert new version") @@ -417,12 +417,12 @@ case err2 == sql.ErrNoRows: //feedback.Info("unchanged") unchanged++ - return continueErr + return errContinue case err2 != nil: key := pgxutils.ReadableError{Err: err2}.Error() databaseErrors[key] = append(databaseErrors[key], isrs) unchanged++ - return continueErr + return errContinue default: updatedGauges = append(updatedGauges, isrs) //feedback.Info("update") @@ -477,7 +477,7 @@ key := pgxutils.ReadableError{Err: err}.Error() databaseErrors[key] = append(databaseErrors[key], isrs) unchanged++ - return continueErr + return errContinue } // "Upsert" reference water levels @@ -529,7 +529,7 @@ return tx.Commit() }() - if err != nil && err != continueErr { + if err != nil && err != errContinue { return err, nil } }
--- a/pkg/mesh/cache.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/mesh/cache.go Tue Feb 20 21:28:56 2024 +0100 @@ -48,11 +48,12 @@ const ( directMeshSQL = ` -SELECT mesh_index FROM waterway.sounding_results +SELECT mesh_index, coalesce(mesh_index_version, 1) AS mesh_index_version +FROM waterway.sounding_results WHERE id = $1 ` fetchMeshSQL = ` -SELECT mesh_checksum, mesh_index +SELECT mesh_checksum, mesh_index, coalesce(mesh_index_version, 1) AS mesh_index_version FROM waterway.sounding_results WHERE bottleneck_id = $1 AND date_info = $2::date AND mesh_checksum IS NOT NULL AND mesh_index IS NOT NULL @@ -61,7 +62,8 @@ SELECT CASE WHEN mesh_checksum = $3 THEN NULL ELSE mesh_index - END + END, + coalesce(mesh_index_version, 1) AS mesh_index_version FROM waterway.sounding_results WHERE bottleneck_id = $1 AND date_info = $2::date AND mesh_checksum IS NOT NULL AND mesh_index IS NOT NULL @@ -104,12 +106,13 @@ id int64, ) (*STRTree, error) { var data []byte - err := tx.QueryRowContext(ctx, directMeshSQL, id).Scan(&data) + var version int + err := tx.QueryRowContext(ctx, directMeshSQL, id).Scan(&data, &version) if err != nil { return nil, err } tree := new(STRTree) - if err := tree.FromBytes(data); err != nil { + if err := tree.FromBytes(data, version); err != nil { return nil, err } return tree, nil @@ -134,11 +137,12 @@ var data []byte var checksum string + var version int if entry == nil { // fetch from database err := conn.QueryRowContext( - ctx, fetchMeshSQL, bottleneck, date).Scan(&checksum, &data) + ctx, fetchMeshSQL, bottleneck, date).Scan(&checksum, &data, &version) switch { case err == sql.ErrNoRows: return nil, nil @@ -148,7 +152,7 @@ } else { // check if we are not outdated. err := conn.QueryRowContext( - ctx, checkMeshSQL, bottleneck, date, entry.checksum).Scan(&data) + ctx, checkMeshSQL, bottleneck, date, entry.checksum).Scan(&data, &version) switch { case err == sql.ErrNoRows: return nil, nil @@ -163,7 +167,7 @@ tree := new(STRTree) - if err := tree.FromBytes(data); err != nil { + if err := tree.FromBytes(data, version); err != nil { return nil, err }
--- a/pkg/mesh/loader.go Wed Feb 14 16:56:28 2024 +0100 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,169 +0,0 @@ -// This is Free Software under GNU Affero General Public License v >= 3.0 -// without warranty, see README.md and license for details. -// -// SPDX-License-Identifier: AGPL-3.0-or-later -// License-Filename: LICENSES/AGPL-3.0.txt -// -// Copyright (C) 2018 by via donau -// – Österreichische Wasserstraßen-Gesellschaft mbH -// Software engineering by Intevation GmbH -// -// Author(s): -// * Sascha L. Teichmann <sascha.teichmann@intevation.de> - -package mesh - -import ( - "bufio" - "bytes" - "compress/gzip" - "encoding/binary" - - "gemma.intevation.de/gemma/pkg/log" -) - -func (s *STRTree) deserializeIndex(r *bufio.Reader) error { - var numIndex int32 - if err := binary.Read(r, binary.LittleEndian, &numIndex); err != nil { - return err - } - index := make([]int32, numIndex) - s.index = index - - var last int32 - for i := range index { - v, err := binary.ReadVarint(r) - if err != nil { - return err - } - value := int32(v) + last - index[i] = value - last = value - } - - return nil -} - -func (s *STRTree) deserializeBBoxes(r *bufio.Reader) error { - - var numBBoxes int32 - if err := binary.Read(r, binary.LittleEndian, &numBBoxes); err != nil { - return err - } - - bboxes := make([]Box2D, numBBoxes) - s.bboxes = bboxes - - var err error - - read := func(v *float64) { - if err == nil { - err = binary.Read(r, binary.LittleEndian, v) - } - } - - for i := range bboxes { - read(&bboxes[i].X1) - read(&bboxes[i].Y1) - read(&bboxes[i].X2) - read(&bboxes[i].Y2) - } - - return err -} - -func (s *STRTree) deserialize(r *bufio.Reader) error { - s.tin = new(Tin) - - if err := s.tin.Deserialize(r); err != nil { - return err - } - var numEntries uint8 - if err := binary.Read(r, binary.LittleEndian, &numEntries); err != nil { - return err - } - s.Entries = int(numEntries) - - if err := s.deserializeIndex(r); err != nil { - return err - } - - return s.deserializeBBoxes(r) -} - -// FromBytes restores a STRTree from a binary representation. -func (s *STRTree) FromBytes(data []byte) error { - r, err := gzip.NewReader(bytes.NewReader(data)) - if err != nil { - return err - } - return s.deserialize(bufio.NewReader(r)) -} - -// Deserialize restores a TIN from a binary representation. -func (t *Tin) Deserialize(r *bufio.Reader) error { - - if err := binary.Read(r, binary.LittleEndian, &t.EPSG); err != nil { - return err - } - - log.Infof("EPSG: %d\n", t.EPSG) - - if err := t.Min.Read(r); err != nil { - return err - } - - if err := t.Max.Read(r); err != nil { - return err - } - - log.Infof("BBOX: [[%f, %f, %f], [%f, %f, %f]]\n", - t.Min.X, t.Min.Y, t.Min.Z, - t.Max.X, t.Max.Y, t.Max.Z) - - var numVertices uint32 - if err := binary.Read(r, binary.LittleEndian, &numVertices); err != nil { - return err - } - - log.Infof("vertices: %d\n", numVertices) - - vertices := make([]Vertex, numVertices) - t.Vertices = vertices - - for i := range vertices { - if err := vertices[i].Read(r); err != nil { - return err - } - } - - var numTriangles uint32 - if err := binary.Read(r, binary.LittleEndian, &numTriangles); err != nil { - return err - } - - log.Infof("triangles: %d\n", numTriangles) - - indices := make([]int32, 3*numTriangles) - triangles := make([][]int32, numTriangles) - t.Triangles = triangles - - var last int32 - - for i := range triangles { - tri := indices[:3] - indices = indices[3:] - triangles[i] = tri - for j := range tri { - v, err := binary.ReadVarint(r) - if err != nil { - return err - } - value := int32(v) + last - tri[j] = value - last = value - } - } - - return nil -}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pkg/mesh/meshserialize.go Tue Feb 20 21:28:56 2024 +0100 @@ -0,0 +1,190 @@ +// This is Free Software under GNU Affero General Public License v >= 3.0 +// without warranty, see README.md and license for details. +// +// SPDX-License-Identifier: AGPL-3.0-or-later +// License-Filename: LICENSES/AGPL-3.0.txt +// +// Copyright (C) 2018 by via donau +// – Österreichische Wasserstraßen-Gesellschaft mbH +// Software engineering by Intevation GmbH +// +// Author(s): +// * Sascha L. Teichmann <sascha.teichmann@intevation.de> + +package mesh + +import ( + "bufio" + "bytes" + "compress/gzip" + "encoding/binary" + "fmt" + "io" + + "gemma.intevation.de/gemma/pkg/log" +) + +// Version is current version of the format the mesh index is stored in. +const Version = 2 + +// magicHeader is a magic header to tell if the data blob is a mesh index. +const magicHeader = "SR3D" + +// coalesceVersion returns the most recent version if version is less or equal zero. +func coalesceVersion(version int) int { + if version > 0 { + return version + } + return Version +} + +// OptimizeForSerialization apply version specific storage optimizations +// before serialization. +func (s *STRTree) OptimizeForSerialization(version int) { + version = coalesceVersion(version) + if version == 2 { + s.optimizeForSerializationV2() + } +} + +// Bytes serializes this tree to a byte slice. +func (s *STRTree) Bytes(version int) ([]byte, int, error) { + var buf bytes.Buffer + w, err := gzip.NewWriterLevel(&buf, gzip.BestSpeed) + if err != nil { + return nil, 0, err + } + version = coalesceVersion(version) + if err := s.serializeVn(w, version); err != nil { + return nil, 0, err + } + if err := w.Close(); err != nil { + return nil, 0, err + } + return buf.Bytes(), version, nil +} + +func (s *STRTree) serializeVn(w io.Writer, version int) error { + switch version { + case 1: + return s.serializeV1(w) + case 2: + return s.serializeV2(w) + default: + return fmt.Errorf("cannot serialize mesh version %d", version) + } +} + +// FromBytes restores a STRTree from a binary representation. +func (s *STRTree) FromBytes(data []byte, version int) error { + version = coalesceVersion(version) + r, err := gzip.NewReader(bytes.NewReader(data)) + if err != nil { + return err + } + return s.deserialize(bufio.NewReader(r), version) +} + +func (s *STRTree) deserialize(r *bufio.Reader, version int) error { + header, err := r.Peek(8) + if err != nil { + return err + } + if bytes.HasPrefix(header, []byte(magicHeader)) { + realVersion := int(binary.LittleEndian.Uint32(header[4:])) + if realVersion != version { + return fmt.Errorf("mesh version mismatch: Have %d expect %d", + realVersion, version) + } + // Skip the header + if _, err := r.Discard(8); err != nil { + return err + } + return s.deserializeVn(r, realVersion) + } + return s.deserializeV1(r) +} + +func (s *STRTree) deserializeVn(r *bufio.Reader, version int) error { + switch version { + case 1: + return s.deserializeV1(r) + case 2: + return s.deserializeV2(r) + default: + return fmt.Errorf("cannot deserialize mesh version %d", version) + } +} + +// serializer is a generic function to apply a chain of +// serializer/deserializer functions to an object given a reader or writer. +func serializer[T, S any]( + s S, + t T, + fns ...func(T, S) error, +) error { + for _, fn := range fns { + if err := fn(t, s); err != nil { + return err + } + } + return nil +} + +func (s *STRTree) serializeEntries(w io.Writer) error { + return binary.Write(w, binary.LittleEndian, uint8(s.Entries)) +} + +func (s *STRTree) deserializeEntries(r *bufio.Reader) error { + var numEntries uint8 + if err := binary.Read(r, binary.LittleEndian, &numEntries); err != nil { + return err + } + s.Entries = int(numEntries) + return nil +} + +func (t *Tin) serializeExtent(w io.Writer) error { + if err := t.Min.Write(w); err != nil { + return err + } + return t.Max.Write(w) +} + +func (t *Tin) deserializeExtent(r *bufio.Reader) error { + if err := t.Min.Read(r); err != nil { + return err + } + if err := t.Max.Read(r); err != nil { + return err + } + log.Infof("BBOX: [[%f, %f, %f], [%f, %f, %f]]\n", + t.Min.X, t.Min.Y, t.Min.Z, + t.Max.X, t.Max.Y, t.Max.Z) + return nil +} + +func (t *Tin) serializeEPSG(w io.Writer) error { + return binary.Write(w, binary.LittleEndian, t.EPSG) +} + +func (t *Tin) deserializeEPSG(r *bufio.Reader) error { + if err := binary.Read(r, binary.LittleEndian, &t.EPSG); err != nil { + return err + } + log.Infof("EPSG: %d\n", t.EPSG) + return nil +} + +func serializeHeader() func(*STRTree, io.Writer) error { + return func(_ *STRTree, w io.Writer) error { + _, err := w.Write([]byte(magicHeader)) + return err + } +} + +func serializeVersion(version int) func(*STRTree, io.Writer) error { + return func(_ *STRTree, w io.Writer) error { + return binary.Write(w, binary.LittleEndian, uint32(version)) + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pkg/mesh/meshserialize_v1.go Tue Feb 20 21:28:56 2024 +0100 @@ -0,0 +1,251 @@ +// This is Free Software under GNU Affero General Public License v >= 3.0 +// without warranty, see README.md and license for details. +// +// SPDX-License-Identifier: AGPL-3.0-or-later +// License-Filename: LICENSES/AGPL-3.0.txt +// +// Copyright (C) 2024 by via donau +// – Österreichische Wasserstraßen-Gesellschaft mbH +// Software engineering by Intevation GmbH +// +// Author(s): +// * Sascha L. Teichmann <sascha.teichmann@intevation.de> + +package mesh + +import ( + "bufio" + "encoding/binary" + "io" + "math" + + "gemma.intevation.de/gemma/pkg/log" +) + +func (s *STRTree) serializeV1(w io.Writer) error { + return serializer(w, s, + (*STRTree).serializeTinV1, + (*STRTree).serializeEntries, + (*STRTree).serializeIndexV1, + (*STRTree).serializeBBoxesV1, + ) +} + +func (s *STRTree) serializeTinV1(w io.Writer) error { + return s.tin.serializeV1(w) +} + +func (s *STRTree) serializeBBoxesV1(w io.Writer) error { + if err := binary.Write(w, binary.LittleEndian, int32(len(s.bboxes))); err != nil { + return err + } + var err error + write := func(v float64) { + if err == nil { + err = binary.Write(w, binary.LittleEndian, math.Float64bits(v)) + } + } + for _, box := range s.bboxes { + write(box.X1) + write(box.Y1) + write(box.X2) + write(box.Y2) + } + return err +} + +func (s *STRTree) serializeIndexV1(w io.Writer) error { + if err := binary.Write(w, binary.LittleEndian, int32(len(s.index))); err != nil { + return err + } + var buf [binary.MaxVarintLen32]byte + var last int32 + var written int + for _, x := range s.index { + delta := x - last + n := binary.PutVarint(buf[:], int64(delta)) + for p := buf[:n]; len(p) > 0; p = p[n:] { + var err error + if n, err = w.Write(p); err != nil { + return err + } + written += n + } + last = x + } + log.Infof("compressed index in bytes: %d %.2f (%d %.2f)\n", + written, + float64(written)/(1024*1024), + 4*len(s.index), + float64(4*len(s.index))/(1024*1024), + ) + return nil +} + +func (t *Tin) serializeV1(w io.Writer) error { + return serializer(w, t, + (*Tin).serializeEPSG, + (*Tin).serializeExtent, + (*Tin).serializeVerticesV1, + (*Tin).serializeTrianglesV1, + ) +} + +func (t *Tin) serializeTrianglesV1(w io.Writer) error { + if err := binary.Write( + w, binary.LittleEndian, uint32(len(t.Triangles))); err != nil { + return err + } + var buf [binary.MaxVarintLen32]byte + var written int + var last int32 + for _, triangle := range t.Triangles { + for _, idx := range triangle { + value := idx - last + n := binary.PutVarint(buf[:], int64(value)) + for p := buf[:n]; len(p) > 0; p = p[n:] { + var err error + if n, err = w.Write(p); err != nil { + return err + } + written += n + } + last = idx + } + } + log.Infof("compressed tin indices in bytes: %d (%d)\n", + written, 3*4*len(t.Triangles)) + return nil +} + +func (t *Tin) serializeVerticesV1(w io.Writer) error { + if err := binary.Write( + w, binary.LittleEndian, uint32(len(t.Vertices))); err != nil { + return err + } + var err error + vwrite := func(v float64) { + if err == nil { + err = binary.Write(w, binary.LittleEndian, math.Float64bits(v)) + } + } + for _, v := range t.Vertices { + vwrite(v.X) + vwrite(v.Y) + vwrite(v.Z) + } + if err != nil { + return err + } + log.Infof("vertices %d (%d)\n", len(t.Vertices), len(t.Vertices)*3*8) + return nil +} + +func (s *STRTree) deserializeV1(r *bufio.Reader) error { + return serializer(r, s, + (*STRTree).deserializeTinV1, + (*STRTree).deserializeEntries, + (*STRTree).deserializeIndexV1, + (*STRTree).deserializeBBoxesV1, + ) +} + +func (s *STRTree) deserializeBBoxesV1(r *bufio.Reader) error { + var numBBoxes int32 + if err := binary.Read(r, binary.LittleEndian, &numBBoxes); err != nil { + return err + } + bboxes := make([]Box2D, numBBoxes) + s.bboxes = bboxes + var err error + read := func(v *float64) { + if err == nil { + err = binary.Read(r, binary.LittleEndian, v) + } + } + for i := range bboxes { + read(&bboxes[i].X1) + read(&bboxes[i].Y1) + read(&bboxes[i].X2) + read(&bboxes[i].Y2) + } + return err +} + +func (s *STRTree) deserializeIndexV1(r *bufio.Reader) error { + var numIndex int32 + if err := binary.Read(r, binary.LittleEndian, &numIndex); err != nil { + return err + } + index := make([]int32, numIndex) + s.index = index + var last int32 + for i := range index { + v, err := binary.ReadVarint(r) + if err != nil { + return err + } + value := int32(v) + last + index[i] = value + last = value + } + return nil +} + +func (s *STRTree) deserializeTinV1(r *bufio.Reader) error { + s.tin = new(Tin) + return s.tin.deserializeV1(r) +} + +// deserializeV1 restores a TIN from a binary representation. +func (t *Tin) deserializeV1(r *bufio.Reader) error { + return serializer(r, t, + (*Tin).deserializeEPSG, + (*Tin).deserializeExtent, + (*Tin).deserializeVerticesV1, + (*Tin).deserializeTrianglesV1, + ) +} + +func (t *Tin) deserializeVerticesV1(r *bufio.Reader) error { + var numVertices uint32 + if err := binary.Read(r, binary.LittleEndian, &numVertices); err != nil { + return err + } + log.Infof("vertices: %d\n", numVertices) + vertices := make([]Vertex, numVertices) + t.Vertices = vertices + for i := range vertices { + if err := vertices[i].Read(r); err != nil { + return err + } + } + return nil +} + +func (t *Tin) deserializeTrianglesV1(r *bufio.Reader) error { + var numTriangles uint32 + if err := binary.Read(r, binary.LittleEndian, &numTriangles); err != nil { + return err + } + log.Infof("triangles: %d\n", numTriangles) + indices := make([]int32, 3*numTriangles) + triangles := make([][]int32, numTriangles) + t.Triangles = triangles + var last int32 + for i := range triangles { + tri := indices[:3] + indices = indices[3:] + triangles[i] = tri + for j := range tri { + v, err := binary.ReadVarint(r) + if err != nil { + return err + } + value := int32(v) + last + tri[j] = value + last = value + } + } + return nil +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pkg/mesh/meshserialize_v2.go Tue Feb 20 21:28:56 2024 +0100 @@ -0,0 +1,324 @@ +// This is Free Software under GNU Affero General Public License v >= 3.0 +// without warranty, see README.md and license for details. +// +// SPDX-License-Identifier: AGPL-3.0-or-later +// License-Filename: LICENSES/AGPL-3.0.txt +// +// Copyright (C) 2024 by via donau +// – Österreichische Wasserstraßen-Gesellschaft mbH +// Software engineering by Intevation GmbH +// +// Author(s): +// * Sascha L. Teichmann <sascha.teichmann@intevation.de> + +package mesh + +import ( + "bufio" + "cmp" + "encoding/binary" + "io" + "math" + "slices" + + "gemma.intevation.de/gemma/pkg/common" +) + +// QuantScale is the after point scale of the quantization of X/Y data. +const QuantScale = 1_000 + +func quant(x float64) int64 { return int64(math.Round(x * QuantScale)) } +func unquant(x int64) float64 { return float64(x) / QuantScale } + +func (s *STRTree) serializeV2(w io.Writer) error { + return serializer(w, s, + serializeHeader(), + serializeVersion(2), + (*STRTree).serializeTinV2, + (*STRTree).serializeEntries, + (*STRTree).serializeIndexV2, + ) +} + +func (s *STRTree) serializeTinV2(w io.Writer) error { + return s.tin.serializeV2(w) +} + +func (t *Tin) serializeV2(w io.Writer) error { + return serializer(w, t, + (*Tin).serializeEPSG, + (*Tin).serializeExtent, + (*Tin).serializeVerticesV2, + (*Tin).serializeTrianglesV2, + ) +} + +func zigZag(buf []byte, w io.Writer, x int64) error { + _, err := w.Write(buf[:binary.PutVarint(buf, x)]) + return err +} + +func (t *Tin) serializeVerticesV2(w io.Writer) error { + vertices := t.Vertices + if err := binary.Write(w, binary.LittleEndian, uint32(len(vertices))); err != nil { + return err + } + m := t.Min + buf := make([]byte, binary.MaxVarintLen64) + for dim := 0; dim <= 2; dim++ { + delta := common.Delta() + for i := range vertices { + var v float64 + switch dim { + case 0: + v = vertices[i].X - m.X + case 1: + v = vertices[i].Y - m.Y + case 2: + v = vertices[i].Z - m.Z + } + q := quant(v) + d := delta(q) + if err := zigZag(buf, w, d); err != nil { + return err + } + } + } + return nil +} + +func (t *Tin) serializeTrianglesV2(w io.Writer) error { + triangles := t.Triangles + if err := binary.Write(w, binary.LittleEndian, uint32(len(triangles))); err != nil { + return err + } + buf := make([]byte, binary.MaxVarintLen64) + delta := common.Delta() + for _, tri := range triangles { + for _, idx := range tri { + d := delta(int64(idx)) + if err := zigZag(buf, w, d); err != nil { + return err + } + } + } + return nil +} + +func (s *STRTree) serializeIndexV2(w io.Writer) error { + index := s.index + if err := binary.Write(w, binary.LittleEndian, uint32(len(index))); err != nil { + return err + } + buf := make([]byte, binary.MaxVarintLen64) + delta := common.Delta() + for _, idx := range index { + d := delta(int64(idx)) + if err := zigZag(buf, w, d); err != nil { + return err + } + } + return nil +} + +func (s *STRTree) deserializeV2(r *bufio.Reader) error { + // The header is already skipped here. + if err := serializer(r, s, + (*STRTree).deserializeTinV2, + (*STRTree).deserializeEntries, + (*STRTree).deserializeIndexV2, + ); err != nil { + return err + } + s.rebuildBBoxes() + return nil +} + +func (s *STRTree) deserializeTinV2(r *bufio.Reader) error { + s.tin = new(Tin) + return s.tin.deserializeV2(r) +} + +func (s *STRTree) deserializeIndexV2(r *bufio.Reader) error { + var numIndices uint32 + if err := binary.Read(r, binary.LittleEndian, &numIndices); err != nil { + return err + } + index := make([]int32, numIndices) + s.index = index + invDelta := common.InvDelta() + for i := range index { + d, err := binary.ReadVarint(r) + if err != nil { + return err + } + index[i] = int32(invDelta(d)) + } + return nil +} + +func (t *Tin) deserializeV2(r *bufio.Reader) error { + return serializer(r, t, + (*Tin).deserializeEPSG, + (*Tin).deserializeExtent, + (*Tin).deserializeVerticesV2, + (*Tin).deserializeTrianglesV2, + ) +} + +func (t *Tin) deserializeVerticesV2(r *bufio.Reader) error { + var numVertices uint32 + if err := binary.Read(r, binary.LittleEndian, &numVertices); err != nil { + return err + } + vertices := make([]Vertex, numVertices) + t.Vertices = vertices + m := t.Min + for dim := 0; dim <= 2; dim++ { + invDelta := common.InvDelta() + for i := range vertices { + d, err := binary.ReadVarint(r) + if err != nil { + return err + } + v := unquant(invDelta(d)) + switch dim { + case 0: + vertices[i].X = v + m.X + case 1: + vertices[i].Y = v + m.Y + case 2: + vertices[i].Z = v + m.Z + } + } + } + return nil +} + +func (t *Tin) deserializeTrianglesV2(r *bufio.Reader) error { + var numTriangles uint32 + if err := binary.Read(r, binary.LittleEndian, &numTriangles); err != nil { + return err + } + indices := make([]int32, 3*numTriangles) + triangles := make([][]int32, numTriangles) + t.Triangles = triangles + invDelta := common.InvDelta() + for i := range triangles { + tri := indices[:3] + indices = indices[3:] + triangles[i] = tri + for j := range tri { + v, err := binary.ReadVarint(r) + if err != nil { + return err + } + tri[j] = int32(invDelta(v)) + } + } + return nil +} + +// optimizeForSerializationV2 prepares the mesh to be stored in V2. +func (s *STRTree) optimizeForSerializationV2() { + s.removeUnusedTriangles() + s.sortVertices() + s.sortIndices() +} + +// removeUnusedTriangles removes all triangles from the +// TIN that are not registered in the spatial index. +func (s *STRTree) removeUnusedTriangles() { + used := make([]bool, len(s.tin.Triangles)) + unused := len(used) + s.allTriangleIndices(func(indices []int32) { + for _, idx := range indices { + used[idx] = true + unused-- // They only occur once in the spatial index. + } + }) + if unused <= 0 { + return + } + newTris := make([][]int32, 0, len(s.tin.Triangles)-unused) + remap := map[int32]int32{} + for idx, tri := range s.tin.Triangles { + if used[idx] { + remap[int32(idx)] = int32(len(newTris)) + newTris = append(newTris, tri) + } + } + s.tin.Triangles = newTris + // Update the spatial index as the gaps are now closed. + s.allTriangleIndices(func(indices []int32) { + for i, idx := range indices { + indices[i] = remap[idx] + } + }) +} + +// sortVertices so that the deltas between neighbors are minimized. +func (s *STRTree) sortVertices() { + vertices := s.tin.Vertices + indices := make([]int32, len(vertices)) + for i := range indices { + indices[i] = int32(i) + } + + // Take aspect ratio of bbox into account. + width := s.tin.Max.X - s.tin.Min.X + height := s.tin.Max.Y - s.tin.Min.Y + if width == 0 || height == 0 { + return + } + + // v = len(vertices) + // r = max(w, h)/min(w, h) + // n * t = v <=> n = v/t + // n / t = r <=> n = r*t + // v/t = r*t + // v = r*t^2 + // v/r = t^2 + // t = sqrt(v/r) + r := float64(max(width, height)) / float64(min(width, height)) + t := int(math.Ceil(math.Sqrt(float64(len(vertices)) / r))) + + var d1, d2 func(int32, int32) int + + if width > height { + // Sort in X first and slices alternating up and down + slices.SortFunc(indices, func(a, b int32) int { + return cmp.Compare(vertices[a].X, vertices[b].X) + }) + d1 = func(a, b int32) int { return cmp.Compare(vertices[a].Y, vertices[b].Y) } + d2 = func(a, b int32) int { return cmp.Compare(vertices[b].Y, vertices[a].Y) } + } else { + // Sort in Y first and slices alternating left and right + slices.SortFunc(indices, func(a, b int32) int { + return cmp.Compare(vertices[a].Y, vertices[b].Y) + }) + d1 = func(a, b int32) int { return cmp.Compare(vertices[a].X, vertices[b].X) } + d2 = func(a, b int32) int { return cmp.Compare(vertices[b].X, vertices[a].X) } + } + + for p := indices; len(p) > 0; d1, d2 = d2, d1 { + l := min(len(p), t) + slices.SortStableFunc(p[:l], d1) + p = p[l:] + } + + v2 := make([]Vertex, len(vertices)) + reindices := make([]int32, len(indices)) + for i, idx := range indices { + v2[i] = vertices[idx] + reindices[idx] = int32(i) + } + copy(vertices, v2) + + // Update the indices in the triangles. + for _, tri := range s.tin.Triangles { + for i, idx := range tri { + tri[i] = reindices[idx] + } + } +}
--- a/pkg/mesh/raster.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/mesh/raster.go Tue Feb 20 21:28:56 2024 +0100 @@ -104,8 +104,10 @@ n++ } - if n > 0 { + if n > 0 && !math.IsNaN(sum) { row[j] = sum / float64(n) + } else { + row[j] = noData } px += r.CellSize } @@ -168,7 +170,7 @@ n++ } - if n > 0 { + if n > 0 && !math.IsNaN(sum) { row[j] -= sum / float64(n) } else { row[j] = noData
--- a/pkg/mesh/strtree.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/mesh/strtree.go Tue Feb 20 21:28:56 2024 +0100 @@ -14,14 +14,11 @@ package mesh import ( - "bytes" - "compress/gzip" - "encoding/binary" - "io" + "cmp" "math" - "sort" - - "gemma.intevation.de/gemma/pkg/log" + "runtime" + "slices" + "sync" ) // STRTreeDefaultEntries is the default number of children per node and leaf. @@ -169,6 +166,132 @@ s.index[0] = root } +// countNodes returns the number of nodes for a given index. +func (s *STRTree) countNodes() int { + if len(s.index) == 0 { + return 0 + } + count := 0 + stack := []int32{s.index[0]} + for len(stack) > 0 { + top := stack[len(stack)-1] + stack = stack[:len(stack)-1] + count++ + if top > 0 { // node + n := s.index[top+1] + stack = append(stack, s.index[top+2:top+2+n]...) + } + } + return count +} + +// rebuildBBoxes rebuilds the bounding boxes for a given index and triangles. +func (s *STRTree) rebuildBBoxes() { + + num := s.countNodes() + if num == 0 { + return + } + bboxes := make([]Box2D, num) + s.bboxes = bboxes + + var recurse func(int32, int32) Box2D + recurse = func(top, depth int32) Box2D { + var box Box2D + if top > 0 { // node + n := s.index[top+1] + for i, child := range s.index[top+2 : top+2+n] { + if i == 0 { + box = recurse(child, depth+1) + } else { + box = box.Union(recurse(child, depth+1)) + } + } + } else { // leaf + top = -top - 1 + n := s.index[top+1] + for i, idx := range s.index[top+2 : top+2+n] { + ti := s.tin.Triangles[idx] + t := Triangle{ + s.tin.Vertices[ti[2]], + s.tin.Vertices[ti[0]], + s.tin.Vertices[ti[1]], + } + if i == 0 { + box = t.BBox() + } else { + box = box.Union(t.BBox()) + } + } + } + bboxes[s.index[top]] = box + return box + } + + // Check if we can boost re-building with some extra CPU cores. + cpus := max(1, runtime.NumCPU()/2) + if cpus == 1 { + recurse(s.index[0], 0) + return + } + + type job struct { + top int32 + depth int32 + store func(Box2D) + } + + jobs := make(chan job) + var wg sync.WaitGroup + + singleThreaded := recurse + + for i := 0; i < cpus; i++ { + wg.Add(1) + go func() { + defer wg.Done() + for j := range jobs { + j.store(singleThreaded(j.top, j.depth)) + } + }() + } + + recurse = func(top, depth int32) Box2D { + // Only handle nodes at level 1. + if depth != 1 || top <= 0 { + return singleThreaded(top, depth) + } + var ( + box Box2D + done = make(chan struct{}) + n = s.index[top+1] + count int32 + mu sync.Mutex + ) + store := func(b Box2D) { + mu.Lock() + defer mu.Unlock() + if count == 0 { + box = b + } else { + box = box.Union(b) + } + if count++; count >= n { + close(done) + } + } + for _, child := range s.index[top+2 : top+2+n] { + jobs <- job{top: child, depth: depth + 1, store: store} + } + <-done + bboxes[s.index[top]] = box + return box + } + recurse(s.index[0], 0) + close(jobs) + wg.Wait() +} + // BuildWithout builds a tree for a given TIN ignoring the triangles // with the indices given in the remove map. func (s *STRTree) BuildWithout(t *Tin, remove map[int32]struct{}) { @@ -252,95 +375,6 @@ return removed } -func (s *STRTree) serializeIndex(w io.Writer) error { - - if err := binary.Write(w, binary.LittleEndian, int32(len(s.index))); err != nil { - return err - } - - var buf [binary.MaxVarintLen32]byte - - var last int32 - var written int - - for _, x := range s.index { - delta := x - last - n := binary.PutVarint(buf[:], int64(delta)) - for p := buf[:n]; len(p) > 0; p = p[n:] { - var err error - if n, err = w.Write(p); err != nil { - return err - } - written += n - } - last = x - } - - log.Infof("compressed index in bytes: %d %.2f (%d %.2f)\n", - written, - float64(written)/(1024*1024), - 4*len(s.index), - float64(4*len(s.index))/(1024*1024), - ) - - return nil -} - -func (s *STRTree) serializeBBoxes(w io.Writer) (rr error) { - - if err := binary.Write(w, binary.LittleEndian, int32(len(s.bboxes))); err != nil { - return err - } - - var err error - - write := func(v float64) { - if err == nil { - err = binary.Write(w, binary.LittleEndian, math.Float64bits(v)) - } - } - for _, box := range s.bboxes { - write(box.X1) - write(box.Y1) - write(box.X2) - write(box.Y2) - } - - return err -} - -// Bytes serializes this tree to a byte slice. -func (s *STRTree) Bytes() ([]byte, error) { - - var buf bytes.Buffer - w, err := gzip.NewWriterLevel(&buf, gzip.BestSpeed) - if err != nil { - return nil, err - } - - if err := s.tin.serialize(w); err != nil { - return nil, err - } - - if err := binary.Write(w, binary.LittleEndian, uint8(s.Entries)); err != nil { - return nil, err - } - - if err := s.serializeIndex(w); err != nil { - return nil, err - } - - if err := s.serializeBBoxes(w); err != nil { - return nil, err - } - - if err := w.Close(); err != nil { - return nil, err - } - - return buf.Bytes(), nil -} - func (s *STRTree) allTriangles(pos int32, tris map[int32]struct{}) { stack := []int32{pos} for len(stack) > 0 { @@ -360,10 +394,10 @@ } func (s *STRTree) build(items []int32) int32 { - sort.Slice(items, func(i, j int) bool { - ti := s.tin.Triangles[items[i]] - tj := s.tin.Triangles[items[j]] - return s.tin.Vertices[ti[0]].X < s.tin.Vertices[tj[0]].X + slices.SortFunc(items, func(i, j int32) int { + ti := s.tin.Triangles[i] + tj := s.tin.Triangles[j] + return cmp.Compare(s.tin.Vertices[ti[0]].X, s.tin.Vertices[tj[0]].X) }) P := int(math.Ceil(float64(len(items)) / float64(s.Entries))) @@ -373,10 +407,10 @@ leaves := s.strJoin( slices, S, - func(i, j int32) bool { + func(i, j int32) int { ti := s.tin.Triangles[i] tj := s.tin.Triangles[j] - return s.tin.Vertices[ti[0]].Y < s.tin.Vertices[tj[0]].Y + return cmp.Compare(s.tin.Vertices[ti[0]].Y, s.tin.Vertices[tj[0]].Y) }, s.allocLeaf, ) @@ -390,8 +424,8 @@ return s.allocNode(items) } - sort.Slice(items, func(i, j int) bool { - return s.bbox(items[i]).X1 < s.bbox(items[j]).X1 + slices.SortFunc(items, func(i, j int32) int { + return cmp.Compare(s.bbox(i).X1, s.bbox(j).X1) }) P := int(math.Ceil(float64(len(items)) / float64(s.Entries))) @@ -401,7 +435,7 @@ nodes := s.strJoin( slices, S, - func(i, j int32) bool { return s.bbox(i).Y1 < s.bbox(j).Y1 }, + func(i, j int32) int { return cmp.Compare(s.bbox(i).Y1, s.bbox(j).Y1) }, s.allocNode, ) @@ -432,16 +466,14 @@ } func (s *STRTree) strJoin( - slices [][]int32, S int, - less func(int32, int32) bool, + slics [][]int32, S int, + cmp func(int32, int32) int, alloc func([]int32) int32, ) []int32 { nodes := make([]int32, 0, S*S) - for _, slice := range slices { - sort.Slice(slice, func(i, j int) bool { - return less(slice[i], slice[j]) - }) + for _, slice := range slics { + slices.SortFunc(slice, cmp) for len(slice) > 0 { var n int @@ -504,3 +536,43 @@ } return int32(-(pos + 1)) } + +// allTriangleIndices passes all triangle indices to callback fn. +func (s *STRTree) allTriangleIndices(fn func([]int32)) { + stack := []int32{s.index[0]} + for len(stack) > 0 { + top := stack[len(stack)-1] + stack = stack[:len(stack)-1] + if top > 0 { // node + n := s.index[top+1] + stack = append(stack, s.index[top+2:top+2+n]...) + } else { // leaf + top = -top - 1 + n := s.index[top+1] + fn(s.index[top+2 : top+2+n]) + } + } +} + +// sortIndices sorts the indices in the inner nodes and leaves of the tree. +// This helps if the index array is delta encoded in serialization. +// It also may help reduding CPU cache line misses during usage because +// redirects are ordered closer together. +func (s *STRTree) sortIndices() { + stack := []int32{s.index[0]} + for len(stack) > 0 { + top := stack[len(stack)-1] + stack = stack[:len(stack)-1] + if top > 0 { // node + n := s.index[top+1] + children := s.index[top+2 : top+2+n] + stack = append(stack, children...) + slices.Sort(children) + } else { // leaf + top = -top - 1 + n := s.index[top+1] + triangles := s.index[top+2 : top+2+n] + slices.Sort(triangles) + } + } +}
--- a/pkg/mesh/tin.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/mesh/tin.go Tue Feb 20 21:28:56 2024 +0100 @@ -18,7 +18,6 @@ "encoding/binary" "errors" "fmt" - "io" "math" "gemma.intevation.de/gemma/pkg/log" @@ -207,67 +206,3 @@ } return t.FromWKB(data) } - -func (t *Tin) serialize(w io.Writer) error { - - if err := binary.Write(w, binary.LittleEndian, t.EPSG); err != nil { - return err - } - - if err := t.Min.Write(w); err != nil { - return err - } - if err := t.Max.Write(w); err != nil { - return err - } - - if err := binary.Write( - w, binary.LittleEndian, uint32(len(t.Vertices))); err != nil { - return err - } - - var err error - vwrite := func(v float64) { - if err == nil { - err = binary.Write(w, binary.LittleEndian, math.Float64bits(v)) - } - } - - for _, v := range t.Vertices { - vwrite(v.X) - vwrite(v.Y) - vwrite(v.Z) - } - - if err != nil { - return err - } - log.Infof("vertices %d (%d)\n", len(t.Vertices), len(t.Vertices)*3*8) - - if err := binary.Write( - w, binary.LittleEndian, uint32(len(t.Triangles))); err != nil { - return err - } - - var buf [binary.MaxVarintLen32]byte - var written int - var last int32 - for _, triangle := range t.Triangles { - for _, idx := range triangle { - value := idx - last - n := binary.PutVarint(buf[:], int64(value)) - for p := buf[:n]; len(p) > 0; p = p[n:] { - var err error - if n, err = w.Write(p); err != nil { - return err - } - written += n - } - last = idx - } - } - log.Infof("compressed tin indices in bytes: %d (%d)\n", - written, 3*4*len(t.Triangles)) - - return nil -}
--- a/pkg/mesh/vertex.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/mesh/vertex.go Tue Feb 20 21:28:56 2024 +0100 @@ -88,7 +88,24 @@ v0 := t[1].Sub(t[0]) v1 := t[2].Sub(t[0]) - n := v0.Cross(v1).Normalize() + n := v0.Cross(v1) + + // If the length of normal is near zero assume we have + // a plane constant in z with an average z value of + // the three vertices. + // This should protect us from the effects of collinear + // geometries. + l := n.Length() + if l < 1e-7 { + sum := t[0].Z + t[1].Z + t[2].Z + return Plane3D{ + A: 0, + B: 0, + C: 1, + D: -sum / 3, + } + } + n = n.Scale(1 / l) // x*nx+ y*ny+ z*nz + d = 0 // d = - (x*nx+ y*ny + z*nz) @@ -1144,6 +1161,39 @@ return out } +// QuantizeXY quantize the X/Y values to scale and +// removes duplicates in place. The z value of +// duplicates will be averaged pairwise. +func (mpz MultiPointZ) QuantizeXY(scale float64) MultiPointZ { + type qpoint struct { + x int64 + y int64 + } + m := make(map[qpoint]float64, len(mpz)) + for _, p := range mpz { + k := qpoint{ + x: int64(math.Round(p.X * scale)), + y: int64(math.Round(p.Y * scale)), + } + if z, ok := m[k]; ok { + m[k] = (z + p.Z) * 0.5 + } else { + m[k] = p.Z + } + } + i := 0 + invScale := 1 / scale + for k, z := range m { + mpz[i] = Vertex{ + X: float64(k.x) * invScale, + Y: float64(k.y) * invScale, + Z: z, + } + i++ + } + return mpz[:i] +} + // Filter returns a copy removed the vertices which // don't pass the filter test. func (mpz MultiPointZ) Filter(filter func(Vertex) bool) MultiPointZ {
--- a/pkg/misc/http.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/misc/http.go Tue Feb 20 21:28:56 2024 +0100 @@ -17,7 +17,6 @@ "bufio" "fmt" "io" - "io/ioutil" "net/http" "os" "path/filepath" @@ -54,7 +53,7 @@ } defer f.Close() - dir, err := ioutil.TempDir(config.TmpDir(), field) + dir, err := os.MkdirTemp(config.TmpDir(), field) if err != nil { return "", err }
--- a/pkg/soap/soap.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/soap/soap.go Tue Feb 20 21:28:56 2024 +0100 @@ -19,7 +19,7 @@ "crypto/tls" "encoding/xml" "fmt" - "io/ioutil" + "io" "math/rand" "net" "net/http" @@ -311,7 +311,7 @@ defer res.Body.Close() if res.StatusCode < http.StatusOK || res.StatusCode > 299 { - rawbody, err := ioutil.ReadAll(res.Body) + rawbody, err := io.ReadAll(res.Body) var body string if err == nil { if len(rawbody) > 1024 { @@ -325,7 +325,7 @@ res.StatusCode, http.StatusText(res.StatusCode), body) } - rawbody, err := ioutil.ReadAll(res.Body) + rawbody, err := io.ReadAll(res.Body) if err != nil { return err }
--- a/pkg/soap/validate.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/soap/validate.go Tue Feb 20 21:28:56 2024 +0100 @@ -18,7 +18,6 @@ "encoding/xml" "fmt" "io" - "io/ioutil" "os" "os/exec" "path/filepath" @@ -99,7 +98,7 @@ } `xml:"http://schemas.xmlsoap.org/soap/envelope/ Body"` } - content, err := ioutil.ReadAll(r) + content, err := io.ReadAll(r) if err != nil { return err } @@ -127,7 +126,7 @@ cmd.Stdin = bytes.NewReader(content) cmd.Stderr = &stderr - cmd.Stdout = ioutil.Discard + cmd.Stdout = io.Discard if err := cmd.Start(); err != nil { return err
--- a/pkg/wfs/global.go Wed Feb 14 16:56:28 2024 +0100 +++ b/pkg/wfs/global.go Tue Feb 20 21:28:56 2024 +0100 @@ -17,7 +17,6 @@ "bufio" "fmt" "io" - "io/ioutil" "os" "os/exec" "path/filepath" @@ -131,7 +130,7 @@ } tmpDir := config.TmpDir() - dlDir, err := ioutil.TempDir(tmpDir, "wfs-downloads") + dlDir, err := os.MkdirTemp(tmpDir, "wfs-downloads") if err != nil { return err }
--- a/schema/gemma.sql Wed Feb 14 16:56:28 2024 +0100 +++ b/schema/gemma.sql Tue Feb 20 21:28:56 2024 +0100 @@ -811,6 +811,7 @@ depth_reference varchar NOT NULL, -- REFERENCES depth_references, zpg_exception bool NOT NULL DEFAULT FALSE, -- Found no LDC in ZPG case. mesh_checksum varchar, + mesh_index_version int, mesh_index bytea, staging_done boolean NOT NULL DEFAULT false )